Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing

Long-read sequencing (LRS) can resolve repetitive regions, a limitation of short read (SR) data. Reduced cost and instrument size has led to a steady increase in LRS across diagnostics and research. Here, we re-basecalled FAST5 data sequenced between 2018 and 2021 and analyzed the data in relation t...

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Detalles Bibliográficos
Autores principales: Boostrom, Ian, Portal, Edward A. R., Spiller, Owen B., Walsh, Timothy R., Sands, Kirsty
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8928191/
https://www.ncbi.nlm.nih.gov/pubmed/35308384
http://dx.doi.org/10.3389/fmicb.2022.796465

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8928191/
https://www.ncbi.nlm.nih.gov/pubmed/35308384
http://dx.doi.org/10.3389/fmicb.2022.796465

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