Space-efficient representation of genomic k-mer count tables

MOTIVATION: k-mer counting is a common task in bioinformatic pipelines, with many dedicated tools available. Many of these tools produce in output k-mer count tables containing both k-mers and counts, easily reaching tens of GB. Furthermore, such tables do not support efficient random-access queries...

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Detalles Bibliográficos
Autores principales: Shibuya, Yoshihiro, Belazzougui, Djamal, Kucherov, Gregory
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939220/
https://www.ncbi.nlm.nih.gov/pubmed/35317833
http://dx.doi.org/10.1186/s13015-022-00212-0

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939220/
https://www.ncbi.nlm.nih.gov/pubmed/35317833
http://dx.doi.org/10.1186/s13015-022-00212-0

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