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Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis

A recently proposed reaction mechanism of soluble Δ(9) desaturase (Δ(9)D) allowed us to identify auxiliary residues His203, Asp101, Thr206 and Cys222 localized near the di-iron active site that are supposedly involved in the proton transfer (PT) to and from the active site. The PT, along with the el...

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Autores principales: Tupec, Michal, Culka, Martin, Machara, Aleš, Macháček, Stanislav, Bím, Daniel, Svatoš, Aleš, Rulíšek, Lubomír, Pichová, Iva
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940945/
https://www.ncbi.nlm.nih.gov/pubmed/35386101
http://dx.doi.org/10.1016/j.csbj.2022.03.010
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author Tupec, Michal
Culka, Martin
Machara, Aleš
Macháček, Stanislav
Bím, Daniel
Svatoš, Aleš
Rulíšek, Lubomír
Pichová, Iva
author_facet Tupec, Michal
Culka, Martin
Machara, Aleš
Macháček, Stanislav
Bím, Daniel
Svatoš, Aleš
Rulíšek, Lubomír
Pichová, Iva
author_sort Tupec, Michal
collection PubMed
description A recently proposed reaction mechanism of soluble Δ(9) desaturase (Δ(9)D) allowed us to identify auxiliary residues His203, Asp101, Thr206 and Cys222 localized near the di-iron active site that are supposedly involved in the proton transfer (PT) to and from the active site. The PT, along with the electron transfer (ET), seems to be crucial for efficient desaturation. Thus, perturbing the major PT chains is expected to impair the native reaction and (potentially) amplify minor reaction channels, such as the substrate hydroxylation. To verify this hypothesis, we mutated the four residues mentioned above into their counterparts present in a soluble methane monooxygenase (sMMO), and determined the reaction products of mutants. We found that the mutations significantly promote residual monohydroxylation activities on stearoyl-CoA, often at the expense of native desaturation activity. The favored hydroxylation positions are C(9), followed by C(10) and C(11). Reactions with unsaturated substrate, oleoyl-CoA, yield erythro-9,10-diol, cis-9,10-epoxide and a mixture of allylic alcohols. Additionally, using 9- and 11-hydroxystearoyl-CoA, we showed that the desaturation reaction can proceed only with the hydroxyl group at position C(11), whereas the hydroxylation reaction is possible in both cases, i.e. with hydroxyl at position C(9) or C(11). Despite the fact that the overall outcome of hydroxylation is rather modest and that it is mostly the desaturation/hydroxylation ratio that is affected, our results broaden understanding of the origin of chemo- and stereoselectivity of the Δ(9)D and provide further insight into the catalytic action of the NHFe(2) enzymes.
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spelling pubmed-89409452022-04-05 Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis Tupec, Michal Culka, Martin Machara, Aleš Macháček, Stanislav Bím, Daniel Svatoš, Aleš Rulíšek, Lubomír Pichová, Iva Comput Struct Biotechnol J Research Article A recently proposed reaction mechanism of soluble Δ(9) desaturase (Δ(9)D) allowed us to identify auxiliary residues His203, Asp101, Thr206 and Cys222 localized near the di-iron active site that are supposedly involved in the proton transfer (PT) to and from the active site. The PT, along with the electron transfer (ET), seems to be crucial for efficient desaturation. Thus, perturbing the major PT chains is expected to impair the native reaction and (potentially) amplify minor reaction channels, such as the substrate hydroxylation. To verify this hypothesis, we mutated the four residues mentioned above into their counterparts present in a soluble methane monooxygenase (sMMO), and determined the reaction products of mutants. We found that the mutations significantly promote residual monohydroxylation activities on stearoyl-CoA, often at the expense of native desaturation activity. The favored hydroxylation positions are C(9), followed by C(10) and C(11). Reactions with unsaturated substrate, oleoyl-CoA, yield erythro-9,10-diol, cis-9,10-epoxide and a mixture of allylic alcohols. Additionally, using 9- and 11-hydroxystearoyl-CoA, we showed that the desaturation reaction can proceed only with the hydroxyl group at position C(11), whereas the hydroxylation reaction is possible in both cases, i.e. with hydroxyl at position C(9) or C(11). Despite the fact that the overall outcome of hydroxylation is rather modest and that it is mostly the desaturation/hydroxylation ratio that is affected, our results broaden understanding of the origin of chemo- and stereoselectivity of the Δ(9)D and provide further insight into the catalytic action of the NHFe(2) enzymes. Research Network of Computational and Structural Biotechnology 2022-03-14 /pmc/articles/PMC8940945/ /pubmed/35386101 http://dx.doi.org/10.1016/j.csbj.2022.03.010 Text en © 2022 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Tupec, Michal
Culka, Martin
Machara, Aleš
Macháček, Stanislav
Bím, Daniel
Svatoš, Aleš
Rulíšek, Lubomír
Pichová, Iva
Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title_full Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title_fullStr Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title_full_unstemmed Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title_short Understanding desaturation/hydroxylation activity of castor stearoyl Δ(9)-Desaturase through rational mutagenesis
title_sort understanding desaturation/hydroxylation activity of castor stearoyl δ(9)-desaturase through rational mutagenesis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940945/
https://www.ncbi.nlm.nih.gov/pubmed/35386101
http://dx.doi.org/10.1016/j.csbj.2022.03.010
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