Cargando…
Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP
Our cluster analysis of the Cancer Genome Atlas for co-expression of HSP27 and CRYAB in breast cancer patients identified three patient groups based on their expression level combination (high HSP27 + low CRYAB; low HSP27 + high CRYAB; similar HSP27 + CRYAB). Our analyses also suggest that there is...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943080/ https://www.ncbi.nlm.nih.gov/pubmed/35235182 http://dx.doi.org/10.1007/s12192-022-01258-0 |
_version_ | 1784673442061090816 |
---|---|
author | Quinlan, Philip R. Figeuredo, Grazziela Mongan, Nigel Jordan, Lee B. Bray, Susan E. Sreseli, Roman Ashfield, Alison Mitsch, Jurgen van den Ijssel, Paul Thompson, Alastair M. Quinlan, Roy A. |
author_facet | Quinlan, Philip R. Figeuredo, Grazziela Mongan, Nigel Jordan, Lee B. Bray, Susan E. Sreseli, Roman Ashfield, Alison Mitsch, Jurgen van den Ijssel, Paul Thompson, Alastair M. Quinlan, Roy A. |
author_sort | Quinlan, Philip R. |
collection | PubMed |
description | Our cluster analysis of the Cancer Genome Atlas for co-expression of HSP27 and CRYAB in breast cancer patients identified three patient groups based on their expression level combination (high HSP27 + low CRYAB; low HSP27 + high CRYAB; similar HSP27 + CRYAB). Our analyses also suggest that there is a statistically significant inverse relationship between HSP27 and CRYAB and known clinicopathological markers in breast cancer. Screening an unbiased 248 breast cancer patient tissue microarray (TMA) for the protein expression of HSP27 and phosphorylated HSP27 (HSP27-82pS) with CRYAB also identified three patient groups based on HSP27 and CRYAB expression levels. TMA24 also had recorded clinical-pathological parameters, such as ER and PR receptor status, patient survival, and TP53 mutation status. High HSP27 protein levels were significant with ER and PR expression. HSP27-82pS associated with the best patient survival (Log Rank test). High CRYAB expression in combination with wild-type TP53 was significant for patient survival, but a different patient outcome was observed when mutant TP53 was combined with high CRYAB expression. Our data suggest that HSP27 and CRYAB have different epichaperome influences in breast cancer, but more importantly evidence the value of a cluster analysis that considers their coexpression. Our approach can deliver convergence for archival datasets as well as those from recent treatment and patient cohorts and can align HSP27 and CRYAB expression to important clinical-pathological features of breast cancer. |
format | Online Article Text |
id | pubmed-8943080 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-89430802022-04-22 Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP Quinlan, Philip R. Figeuredo, Grazziela Mongan, Nigel Jordan, Lee B. Bray, Susan E. Sreseli, Roman Ashfield, Alison Mitsch, Jurgen van den Ijssel, Paul Thompson, Alastair M. Quinlan, Roy A. Cell Stress Chaperones Short Communication Our cluster analysis of the Cancer Genome Atlas for co-expression of HSP27 and CRYAB in breast cancer patients identified three patient groups based on their expression level combination (high HSP27 + low CRYAB; low HSP27 + high CRYAB; similar HSP27 + CRYAB). Our analyses also suggest that there is a statistically significant inverse relationship between HSP27 and CRYAB and known clinicopathological markers in breast cancer. Screening an unbiased 248 breast cancer patient tissue microarray (TMA) for the protein expression of HSP27 and phosphorylated HSP27 (HSP27-82pS) with CRYAB also identified three patient groups based on HSP27 and CRYAB expression levels. TMA24 also had recorded clinical-pathological parameters, such as ER and PR receptor status, patient survival, and TP53 mutation status. High HSP27 protein levels were significant with ER and PR expression. HSP27-82pS associated with the best patient survival (Log Rank test). High CRYAB expression in combination with wild-type TP53 was significant for patient survival, but a different patient outcome was observed when mutant TP53 was combined with high CRYAB expression. Our data suggest that HSP27 and CRYAB have different epichaperome influences in breast cancer, but more importantly evidence the value of a cluster analysis that considers their coexpression. Our approach can deliver convergence for archival datasets as well as those from recent treatment and patient cohorts and can align HSP27 and CRYAB expression to important clinical-pathological features of breast cancer. Springer Netherlands 2022-03-02 2022-03 /pmc/articles/PMC8943080/ /pubmed/35235182 http://dx.doi.org/10.1007/s12192-022-01258-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Short Communication Quinlan, Philip R. Figeuredo, Grazziela Mongan, Nigel Jordan, Lee B. Bray, Susan E. Sreseli, Roman Ashfield, Alison Mitsch, Jurgen van den Ijssel, Paul Thompson, Alastair M. Quinlan, Roy A. Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title | Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title_full | Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title_fullStr | Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title_full_unstemmed | Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title_short | Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP |
title_sort | cluster analyses of the tcga and a tma dataset using the coexpression of hsp27 and cryab improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each shsp |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943080/ https://www.ncbi.nlm.nih.gov/pubmed/35235182 http://dx.doi.org/10.1007/s12192-022-01258-0 |
work_keys_str_mv | AT quinlanphilipr clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT figeuredograzziela clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT mongannigel clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT jordanleeb clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT braysusane clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT sreseliroman clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT ashfieldalison clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT mitschjurgen clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT vandenijsselpaul clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT thompsonalastairm clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp AT quinlanroya clusteranalysesofthetcgaandatmadatasetusingthecoexpressionofhsp27andcryabimprovesalignmentwithclinicalpathologicalparametersofbreastcancerandsuggestsdifferentepichaperomeinfluencesforeachshsp |