Cargando…

Ensemble of nucleic acid absolute quantitation modules for copy number variation detection and RNA profiling

Current gold standard for absolute quantitation of a specific DNA sequence is droplet digital PCR (ddPCR), which has been applied to copy number variation (CNV) detection. However, the number of quantitation modules in ddPCR is limited by fluorescence channels, which thus limits the CNV sensitivity...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Lucia Ruojia, Dai, Peng, Wang, Michael Xiangjiang, Chen, Sherry Xi, Cohen, Evan N., Jayachandran, Gitanjali, Zhang, Jinny Xuemeng, Serrano, Angela V., Xie, Nina Guanyi, Ueno, Naoto T., Reuben, James M., Barcenas, Carlos H., Zhang, David Yu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8979981/ https://www.ncbi.nlm.nih.gov/pubmed/35379811 http://dx.doi.org/10.1038/s41467-022-29487-y

Ejemplares similares

Calibration-free NGS quantitation of mutations below 0.01% VAF
por: Dai, Peng, et al.
Publicado: (2021)

aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
por: Renault, Victor, et al.
Publicado: (2017)

Measurement of absolute copy number variation reveals association with essential hypertension
por: Marques, Francine Z, et al.
Publicado: (2014)

Accurate Inference of Tumor Purity and Absolute Copy Numbers From High-Throughput Sequencing Data
por: Yuan, Xiguo, et al.
Publicado: (2020)

EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data
por: Zhang, Zhongyang, et al.
Publicado: (2019)

High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number
por: Hindson, Benjamin J., et al.
Publicado: (2011)

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data
por: Greenman, Chris D., et al.
Publicado: (2010)

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor
por: Fu, Yi, et al.
Publicado: (2015)

Absolute Copy Numbers of β-Actin Proteins Collected from 10,000 Single Cells
por: Fan, Beiyuan, et al.
Publicado: (2018)

Selection of lncRNAs That Influence the Prognosis of Osteosarcoma Based on Copy Number Variation Data
por: Zhang, Jian, et al.
Publicado: (2022)

Absolute SILAC-Compatible Expression Strain Allows Sumo-2 Copy Number Determination in Clinical Samples
por: Matic, Ivan, et al.
Publicado: (2011)

Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease
por: Olsson, M., et al.
Publicado: (2016)

Normalization using ploidy and genomic DNA copy number allows absolute quantification of transcripts, proteins and metabolites in cells
por: Shimada, Hiroshi, et al.
Publicado: (2010)

Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric
por: Orsburn, Benjamin C.
Publicado: (2021)

Quantitative fluorescence imaging determines the absolute number of locked nucleic acid oligonucleotides needed for suppression of target gene expression
por: Buntz, Annette, et al.
Publicado: (2019)

Absolute copy number differences of Y chromosomal genes between crossbred (Bos taurus × Bos indicus) and Indicine bulls
por: Mukherjee, Ayan, et al.
Publicado: (2013)

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing
por: Ganesamoorthy, Devika, et al.
Publicado: (2018)

GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data
por: Lyng, Heidi, et al.
Publicado: (2008)

Cancer signature ensemble integrating cfDNA methylation, copy number, and fragmentation facilitates multi-cancer early detection
por: Kim, Su Yeon, et al.
Publicado: (2023)

Targeted interrogation of copy number variation using SCIMMkit
por: Zerr, Troy, et al.
Publicado: (2010)

Copy-number-variation and copy-number-alteration region detection by cumulative plots
por: Li, Wentian, et al.
Publicado: (2009)

Interactive analysis of large cancer copy number studies with Copy Number Explorer
por: Newman, Scott
Publicado: (2015)

Antigen-agnostic microfluidics-based circulating tumor cell enrichment and downstream molecular characterization
por: Cohen, Evan N., et al.
Publicado: (2020)

Analysis of copy number variations and possible candidate genes in spontaneous abortion by copy number variation sequencing
por: Bai, Wei, et al.
Publicado: (2023)

Estimates of penetrance for recurrent pathogenic copy-number variations
por: Rosenfeld, Jill A., et al.
Publicado: (2013)

Phenotypic Plasticity in Circulating Tumor Cells Is Associated with Poor Response to Therapy in Metastatic Breast Cancer Patients
por: Cohen, Evan N., et al.
Publicado: (2023)

Copy number variations among silkworms
por: Zhao, Qian, et al.
Publicado: (2014)

The Absolute Number of Oligodendrocytes in the Adult Mouse Brain
por: Valério-Gomes, Bruna, et al.
Publicado: (2018)

Toward Absolute Molecular Numbers in DNA-PAINT
por: Stein, Johannes, et al.
Publicado: (2019)

Plasmodium copy number variation scan: gene copy numbers evaluation in haploid genomes
por: Beghain, Johann, et al.
Publicado: (2016)

Chronic radiation exposure of neuroblastoma cells reduces nMYC copy number
por: Gnanamony, Manu, et al.
Publicado: (2017)

Aberrant telomere length and mitochondrial DNA copy number in suicide completers
por: Otsuka, Ikuo, et al.
Publicado: (2017)

Copy number variants in Ebstein anomaly
por: Giannakou, Andreas, et al.
Publicado: (2017)

Copy number variations and cancer
por: Shlien, Adam, et al.
Publicado: (2009)

Copy number variations and stroke
por: Colaianni, Valeria, et al.
Publicado: (2016)

Copy Number Variations and Schizophrenia
por: Szecówka, Kamila, et al.
Publicado: (2022)

Copy Number Variation and Osteoporosis
por: Lovšin, Nika
Publicado: (2023)

Copy number variations in Japanese children with autism spectrum disorder
por: Sakamoto, Yui, et al.
Publicado: (2021)

Word 2013: absolute beginner's guide
por: Gunter, Sherry Kinkoph
Publicado: (2014)

Stacked ensemble machine learning for porosity and absolute permeability prediction of carbonate rock plugs
por: Kalule, Ramanzani, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_q2d0h30ufdn2jg4gmh535c61ce