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Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2
Effective presentation of antigens by HLA class I molecules to CD8(+) T cells is required for viral elimination and generation of long-term immunological memory. In this study, we applied a single-cell, multi-omic technology to generate a unified ex vivo characterization of the CD8(+) T cell respons...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9017864/ https://www.ncbi.nlm.nih.gov/pubmed/34793243 http://dx.doi.org/10.1126/sciimmunol.abk3070 |
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author | Francis, Joshua M. Leistritz-Edwards, Del Dunn, Augustine Tarr, Christina Lehman, Jesse Dempsey, Conor Hamel, Andrew Rayon, Violeta Liu, Gang Wang, Yuntong Wille, Marcos Durkin, Melissa Hadley, Kane Sheena, Aswathy Roscoe, Benjamin Ng, Mark Rockwell, Graham Manto, Margaret Gienger, Elizabeth Nickerson, Joshua Moarefi, Amir Noble, Michael Malia, Thomas Bardwell, Philip D. Gordon, William Swain, Joanna Skoberne, Mojca Sauer, Karsten Harris, Tim Goldrath, Ananda W. Shalek, Alex K. Coyle, Anthony J. Benoist, Christophe Pregibon, Daniel C. Jilg, Nikolaus Li, Jonathan Rosenthal, Alex Wong, Colline Daley, George Golan, David Heller, Howard Sharpe, Arlene Abayneh, Betelihem A. Allen, Patrick Antille, Diane Armstrong, Katrina Boyce, Siobhan Braley, Joan Branch, Karen Broderick, Katherine Carney, Julia Chan, Andrew Davidson, Susan Dougan, Michael Drew, David Elliman, Ashley Flaherty, Keith Flannery, Jeanne Forde, Pamela Gettings, Elise Griffin, Amanda Grimmel, Sheila Grinke, Kathleen Hall, Kathryn Healy, Meg Henault, Deborah Holland, Grace Kayitesi, Chantal LaValle, Vlasta Lu, Yuting Luthern, Sarah Schneider, Jordan Marchewka Martino, Brittani McNamara, Roseann Nambu, Christian Nelson, Susan Noone, Marjorie Ommerborn, Christine Pacheco, Lois Chris Phan, Nicole Porto, Falisha A Ryan, Edward Selleck, Kathleen Slaughenhaupt, Sue Sheppard, Kimberly Smith Suschana, Elizabeth Wilson, Vivine Carrington, Mary Martin, Maureen Yuki, Yuko Alter, Galit Balazs, Alejandro Bals, Julia Barbash, Max Bartsch, Yannic Boucau, Julie Carrington, Mary Chevalier, Josh Chowdhury, Fatema DeMers, Edward Einkauf, Kevin Fallon, Jon Fedirko, Liz Finn, Kelsey Garcia-Broncano, Pilar Ghebremichael, Musie S. Hartana, Ciputra Jiang, Chenyang Judge, Kelly Kaplonek, Paulina Karpell, Marshall Lai, Peggy Lam, Evan C. Lefteri, Kristina Lian, Xiaodong Lichterfeld, Mathias Lingwood, Daniel Liu, Hang Liu, Jinqing Ly, Natasha Hill, Zachary Manickas Michell, Ashlin Millstrom, Ilan Miranda, Noah O'Callaghan, Claire Osborn, Matthew Pillai, Shiv Rassadkina, Yelizaveta Reissis, Alexandra Ruzicka, Francis Seiger, Kyra Sessa, Libera Sharr, Christianne Shin, Sally Singh, Nishant Sun, Weiwei Sun, Xiaoming Ticheli, Hannah Trocha-Piechocka, Alicja Walker, Bruce Worrall, Daniel Yu, Xu G. Zhu, Alex |
author_facet | Francis, Joshua M. Leistritz-Edwards, Del Dunn, Augustine Tarr, Christina Lehman, Jesse Dempsey, Conor Hamel, Andrew Rayon, Violeta Liu, Gang Wang, Yuntong Wille, Marcos Durkin, Melissa Hadley, Kane Sheena, Aswathy Roscoe, Benjamin Ng, Mark Rockwell, Graham Manto, Margaret Gienger, Elizabeth Nickerson, Joshua Moarefi, Amir Noble, Michael Malia, Thomas Bardwell, Philip D. Gordon, William Swain, Joanna Skoberne, Mojca Sauer, Karsten Harris, Tim Goldrath, Ananda W. Shalek, Alex K. Coyle, Anthony J. Benoist, Christophe Pregibon, Daniel C. Jilg, Nikolaus Li, Jonathan Rosenthal, Alex Wong, Colline Daley, George Golan, David Heller, Howard Sharpe, Arlene Abayneh, Betelihem A. Allen, Patrick Antille, Diane Armstrong, Katrina Boyce, Siobhan Braley, Joan Branch, Karen Broderick, Katherine Carney, Julia Chan, Andrew Davidson, Susan Dougan, Michael Drew, David Elliman, Ashley Flaherty, Keith Flannery, Jeanne Forde, Pamela Gettings, Elise Griffin, Amanda Grimmel, Sheila Grinke, Kathleen Hall, Kathryn Healy, Meg Henault, Deborah Holland, Grace Kayitesi, Chantal LaValle, Vlasta Lu, Yuting Luthern, Sarah Schneider, Jordan Marchewka Martino, Brittani McNamara, Roseann Nambu, Christian Nelson, Susan Noone, Marjorie Ommerborn, Christine Pacheco, Lois Chris Phan, Nicole Porto, Falisha A Ryan, Edward Selleck, Kathleen Slaughenhaupt, Sue Sheppard, Kimberly Smith Suschana, Elizabeth Wilson, Vivine Carrington, Mary Martin, Maureen Yuki, Yuko Alter, Galit Balazs, Alejandro Bals, Julia Barbash, Max Bartsch, Yannic Boucau, Julie Carrington, Mary Chevalier, Josh Chowdhury, Fatema DeMers, Edward Einkauf, Kevin Fallon, Jon Fedirko, Liz Finn, Kelsey Garcia-Broncano, Pilar Ghebremichael, Musie S. Hartana, Ciputra Jiang, Chenyang Judge, Kelly Kaplonek, Paulina Karpell, Marshall Lai, Peggy Lam, Evan C. Lefteri, Kristina Lian, Xiaodong Lichterfeld, Mathias Lingwood, Daniel Liu, Hang Liu, Jinqing Ly, Natasha Hill, Zachary Manickas Michell, Ashlin Millstrom, Ilan Miranda, Noah O'Callaghan, Claire Osborn, Matthew Pillai, Shiv Rassadkina, Yelizaveta Reissis, Alexandra Ruzicka, Francis Seiger, Kyra Sessa, Libera Sharr, Christianne Shin, Sally Singh, Nishant Sun, Weiwei Sun, Xiaoming Ticheli, Hannah Trocha-Piechocka, Alicja Walker, Bruce Worrall, Daniel Yu, Xu G. Zhu, Alex |
author_sort | Francis, Joshua M. |
collection | PubMed |
description | Effective presentation of antigens by HLA class I molecules to CD8(+) T cells is required for viral elimination and generation of long-term immunological memory. In this study, we applied a single-cell, multi-omic technology to generate a unified ex vivo characterization of the CD8(+) T cell response to SARS-CoV-2 across 4 major HLA class I alleles. We found that HLA genotype conditions key features of epitope specificity, TCR α/β sequence diversity, and the utilization of pre-existing SARS-CoV-2 reactive memory T cell pools. Single-cell transcriptomics revealed functionally diverse T cell phenotypes of SARS-CoV-2-reactive T cells, associated with both disease stage and epitope specificity. Our results show that HLA variations significantly influence the CD8(+) T cell repertoire shape and utilization of immune recall upon SARS-CoV-2 infection. |
format | Online Article Text |
id | pubmed-9017864 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-90178642022-05-16 Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 Francis, Joshua M. Leistritz-Edwards, Del Dunn, Augustine Tarr, Christina Lehman, Jesse Dempsey, Conor Hamel, Andrew Rayon, Violeta Liu, Gang Wang, Yuntong Wille, Marcos Durkin, Melissa Hadley, Kane Sheena, Aswathy Roscoe, Benjamin Ng, Mark Rockwell, Graham Manto, Margaret Gienger, Elizabeth Nickerson, Joshua Moarefi, Amir Noble, Michael Malia, Thomas Bardwell, Philip D. Gordon, William Swain, Joanna Skoberne, Mojca Sauer, Karsten Harris, Tim Goldrath, Ananda W. Shalek, Alex K. Coyle, Anthony J. Benoist, Christophe Pregibon, Daniel C. Jilg, Nikolaus Li, Jonathan Rosenthal, Alex Wong, Colline Daley, George Golan, David Heller, Howard Sharpe, Arlene Abayneh, Betelihem A. Allen, Patrick Antille, Diane Armstrong, Katrina Boyce, Siobhan Braley, Joan Branch, Karen Broderick, Katherine Carney, Julia Chan, Andrew Davidson, Susan Dougan, Michael Drew, David Elliman, Ashley Flaherty, Keith Flannery, Jeanne Forde, Pamela Gettings, Elise Griffin, Amanda Grimmel, Sheila Grinke, Kathleen Hall, Kathryn Healy, Meg Henault, Deborah Holland, Grace Kayitesi, Chantal LaValle, Vlasta Lu, Yuting Luthern, Sarah Schneider, Jordan Marchewka Martino, Brittani McNamara, Roseann Nambu, Christian Nelson, Susan Noone, Marjorie Ommerborn, Christine Pacheco, Lois Chris Phan, Nicole Porto, Falisha A Ryan, Edward Selleck, Kathleen Slaughenhaupt, Sue Sheppard, Kimberly Smith Suschana, Elizabeth Wilson, Vivine Carrington, Mary Martin, Maureen Yuki, Yuko Alter, Galit Balazs, Alejandro Bals, Julia Barbash, Max Bartsch, Yannic Boucau, Julie Carrington, Mary Chevalier, Josh Chowdhury, Fatema DeMers, Edward Einkauf, Kevin Fallon, Jon Fedirko, Liz Finn, Kelsey Garcia-Broncano, Pilar Ghebremichael, Musie S. Hartana, Ciputra Jiang, Chenyang Judge, Kelly Kaplonek, Paulina Karpell, Marshall Lai, Peggy Lam, Evan C. Lefteri, Kristina Lian, Xiaodong Lichterfeld, Mathias Lingwood, Daniel Liu, Hang Liu, Jinqing Ly, Natasha Hill, Zachary Manickas Michell, Ashlin Millstrom, Ilan Miranda, Noah O'Callaghan, Claire Osborn, Matthew Pillai, Shiv Rassadkina, Yelizaveta Reissis, Alexandra Ruzicka, Francis Seiger, Kyra Sessa, Libera Sharr, Christianne Shin, Sally Singh, Nishant Sun, Weiwei Sun, Xiaoming Ticheli, Hannah Trocha-Piechocka, Alicja Walker, Bruce Worrall, Daniel Yu, Xu G. Zhu, Alex Sci Immunol Research Articles Effective presentation of antigens by HLA class I molecules to CD8(+) T cells is required for viral elimination and generation of long-term immunological memory. In this study, we applied a single-cell, multi-omic technology to generate a unified ex vivo characterization of the CD8(+) T cell response to SARS-CoV-2 across 4 major HLA class I alleles. We found that HLA genotype conditions key features of epitope specificity, TCR α/β sequence diversity, and the utilization of pre-existing SARS-CoV-2 reactive memory T cell pools. Single-cell transcriptomics revealed functionally diverse T cell phenotypes of SARS-CoV-2-reactive T cells, associated with both disease stage and epitope specificity. Our results show that HLA variations significantly influence the CD8(+) T cell repertoire shape and utilization of immune recall upon SARS-CoV-2 infection. American Association for the Advancement of Science 2021-11-18 /pmc/articles/PMC9017864/ /pubmed/34793243 http://dx.doi.org/10.1126/sciimmunol.abk3070 Text en Copyright © 2021, American Association for the Advancement of Science https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Francis, Joshua M. Leistritz-Edwards, Del Dunn, Augustine Tarr, Christina Lehman, Jesse Dempsey, Conor Hamel, Andrew Rayon, Violeta Liu, Gang Wang, Yuntong Wille, Marcos Durkin, Melissa Hadley, Kane Sheena, Aswathy Roscoe, Benjamin Ng, Mark Rockwell, Graham Manto, Margaret Gienger, Elizabeth Nickerson, Joshua Moarefi, Amir Noble, Michael Malia, Thomas Bardwell, Philip D. Gordon, William Swain, Joanna Skoberne, Mojca Sauer, Karsten Harris, Tim Goldrath, Ananda W. Shalek, Alex K. Coyle, Anthony J. Benoist, Christophe Pregibon, Daniel C. Jilg, Nikolaus Li, Jonathan Rosenthal, Alex Wong, Colline Daley, George Golan, David Heller, Howard Sharpe, Arlene Abayneh, Betelihem A. Allen, Patrick Antille, Diane Armstrong, Katrina Boyce, Siobhan Braley, Joan Branch, Karen Broderick, Katherine Carney, Julia Chan, Andrew Davidson, Susan Dougan, Michael Drew, David Elliman, Ashley Flaherty, Keith Flannery, Jeanne Forde, Pamela Gettings, Elise Griffin, Amanda Grimmel, Sheila Grinke, Kathleen Hall, Kathryn Healy, Meg Henault, Deborah Holland, Grace Kayitesi, Chantal LaValle, Vlasta Lu, Yuting Luthern, Sarah Schneider, Jordan Marchewka Martino, Brittani McNamara, Roseann Nambu, Christian Nelson, Susan Noone, Marjorie Ommerborn, Christine Pacheco, Lois Chris Phan, Nicole Porto, Falisha A Ryan, Edward Selleck, Kathleen Slaughenhaupt, Sue Sheppard, Kimberly Smith Suschana, Elizabeth Wilson, Vivine Carrington, Mary Martin, Maureen Yuki, Yuko Alter, Galit Balazs, Alejandro Bals, Julia Barbash, Max Bartsch, Yannic Boucau, Julie Carrington, Mary Chevalier, Josh Chowdhury, Fatema DeMers, Edward Einkauf, Kevin Fallon, Jon Fedirko, Liz Finn, Kelsey Garcia-Broncano, Pilar Ghebremichael, Musie S. Hartana, Ciputra Jiang, Chenyang Judge, Kelly Kaplonek, Paulina Karpell, Marshall Lai, Peggy Lam, Evan C. Lefteri, Kristina Lian, Xiaodong Lichterfeld, Mathias Lingwood, Daniel Liu, Hang Liu, Jinqing Ly, Natasha Hill, Zachary Manickas Michell, Ashlin Millstrom, Ilan Miranda, Noah O'Callaghan, Claire Osborn, Matthew Pillai, Shiv Rassadkina, Yelizaveta Reissis, Alexandra Ruzicka, Francis Seiger, Kyra Sessa, Libera Sharr, Christianne Shin, Sally Singh, Nishant Sun, Weiwei Sun, Xiaoming Ticheli, Hannah Trocha-Piechocka, Alicja Walker, Bruce Worrall, Daniel Yu, Xu G. Zhu, Alex Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title | Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title_full | Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title_fullStr | Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title_full_unstemmed | Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title_short | Allelic variation in class I HLA determines CD8(+) T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2 |
title_sort | allelic variation in class i hla determines cd8(+) t cell repertoire shape and cross-reactive memory responses to sars-cov-2 |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9017864/ https://www.ncbi.nlm.nih.gov/pubmed/34793243 http://dx.doi.org/10.1126/sciimmunol.abk3070 |
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