CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements

SUMMARY: CellWalkR is an R package that integrates single-cell open chromatin data with cell type labels and bulk epigenetic data to identify cell type-specific regulatory regions. A Graphics Processing Unit (GPU) implementation and downsampling strategies enable thousands of cells to be processed i...

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Detalles Bibliográficos
Autores principales: Przytycki, Pawel F, Pollard, Katherine S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048661/
https://www.ncbi.nlm.nih.gov/pubmed/35274675
http://dx.doi.org/10.1093/bioinformatics/btac150

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048661/
https://www.ncbi.nlm.nih.gov/pubmed/35274675
http://dx.doi.org/10.1093/bioinformatics/btac150

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