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A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine

We report the crystal structure of a new polymorph of l-tyrosine (denoted the β polymorph), prepared by crystallization from the gas phase following vacuum sublimation. Structure determination was carried out by combined analysis of three-dimensional electron diffraction (3D-ED) data and powder X-ra...

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Autores principales: Smalley, Christopher J. H., Hoskyns, Harriet E., Hughes, Colan E., Johnstone, Duncan N., Willhammar, Tom, Young, Mark T., Pickard, Christopher J., Logsdail, Andrew J., Midgley, Paul A., Harris, Kenneth D. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9093151/
https://www.ncbi.nlm.nih.gov/pubmed/35655549
http://dx.doi.org/10.1039/d1sc06467c
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author Smalley, Christopher J. H.
Hoskyns, Harriet E.
Hughes, Colan E.
Johnstone, Duncan N.
Willhammar, Tom
Young, Mark T.
Pickard, Christopher J.
Logsdail, Andrew J.
Midgley, Paul A.
Harris, Kenneth D. M.
author_facet Smalley, Christopher J. H.
Hoskyns, Harriet E.
Hughes, Colan E.
Johnstone, Duncan N.
Willhammar, Tom
Young, Mark T.
Pickard, Christopher J.
Logsdail, Andrew J.
Midgley, Paul A.
Harris, Kenneth D. M.
author_sort Smalley, Christopher J. H.
collection PubMed
description We report the crystal structure of a new polymorph of l-tyrosine (denoted the β polymorph), prepared by crystallization from the gas phase following vacuum sublimation. Structure determination was carried out by combined analysis of three-dimensional electron diffraction (3D-ED) data and powder X-ray diffraction (XRD) data. Specifically, 3D-ED data were required for reliable unit cell determination and space group assignment, with structure solution carried out independently from both 3D-ED data and powder XRD data, using the direct-space strategy for structure solution implemented using a genetic algorithm. Structure refinement was carried out both from powder XRD data, using the Rietveld profile refinement technique, and from 3D-ED data. The final refined structure was validated both by periodic DFT-D calculations, which confirm that the structure corresponds to an energy minimum on the energy landscape, and by the fact that the values of isotropic (13)C NMR chemical shifts calculated for the crystal structure using DFT-D methodology are in good agreement with the experimental high-resolution solid-state (13)C NMR spectrum. Based on DFT-D calculations using the PBE0-MBD method, the β polymorph is meta-stable with respect to the previously reported crystal structure of l-tyrosine (now denoted the α polymorph). Crystal structure prediction calculations using the AIRSS approach suggest that there are three other plausible crystalline polymorphs of l-tyrosine, with higher energy than the α and β polymorphs.
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spelling pubmed-90931512022-06-01 A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine Smalley, Christopher J. H. Hoskyns, Harriet E. Hughes, Colan E. Johnstone, Duncan N. Willhammar, Tom Young, Mark T. Pickard, Christopher J. Logsdail, Andrew J. Midgley, Paul A. Harris, Kenneth D. M. Chem Sci Chemistry We report the crystal structure of a new polymorph of l-tyrosine (denoted the β polymorph), prepared by crystallization from the gas phase following vacuum sublimation. Structure determination was carried out by combined analysis of three-dimensional electron diffraction (3D-ED) data and powder X-ray diffraction (XRD) data. Specifically, 3D-ED data were required for reliable unit cell determination and space group assignment, with structure solution carried out independently from both 3D-ED data and powder XRD data, using the direct-space strategy for structure solution implemented using a genetic algorithm. Structure refinement was carried out both from powder XRD data, using the Rietveld profile refinement technique, and from 3D-ED data. The final refined structure was validated both by periodic DFT-D calculations, which confirm that the structure corresponds to an energy minimum on the energy landscape, and by the fact that the values of isotropic (13)C NMR chemical shifts calculated for the crystal structure using DFT-D methodology are in good agreement with the experimental high-resolution solid-state (13)C NMR spectrum. Based on DFT-D calculations using the PBE0-MBD method, the β polymorph is meta-stable with respect to the previously reported crystal structure of l-tyrosine (now denoted the α polymorph). Crystal structure prediction calculations using the AIRSS approach suggest that there are three other plausible crystalline polymorphs of l-tyrosine, with higher energy than the α and β polymorphs. The Royal Society of Chemistry 2022-03-30 /pmc/articles/PMC9093151/ /pubmed/35655549 http://dx.doi.org/10.1039/d1sc06467c Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Smalley, Christopher J. H.
Hoskyns, Harriet E.
Hughes, Colan E.
Johnstone, Duncan N.
Willhammar, Tom
Young, Mark T.
Pickard, Christopher J.
Logsdail, Andrew J.
Midgley, Paul A.
Harris, Kenneth D. M.
A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title_full A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title_fullStr A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title_full_unstemmed A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title_short A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine
title_sort structure determination protocol based on combined analysis of 3d-ed data, powder xrd data, solid-state nmr data and dft-d calculations reveals the structure of a new polymorph of l-tyrosine
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9093151/
https://www.ncbi.nlm.nih.gov/pubmed/35655549
http://dx.doi.org/10.1039/d1sc06467c
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