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Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance
Post-transcriptional modifications have critical roles in tRNA stability and function(1–4). In thermophiles, tRNAs are heavily modified to maintain their thermal stability under extreme growth temperatures(5,6). Here we identified 2′-phosphouridine (U(p)) at position 47 of tRNAs from thermophilic ar...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9095486/ https://www.ncbi.nlm.nih.gov/pubmed/35477761 http://dx.doi.org/10.1038/s41586-022-04677-2 |
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author | Ohira, Takayuki Minowa, Keiichi Sugiyama, Kei Yamashita, Seisuke Sakaguchi, Yuriko Miyauchi, Kenjyo Noguchi, Ryo Kaneko, Akira Orita, Izumi Fukui, Toshiaki Tomita, Kozo Suzuki, Tsutomu |
author_facet | Ohira, Takayuki Minowa, Keiichi Sugiyama, Kei Yamashita, Seisuke Sakaguchi, Yuriko Miyauchi, Kenjyo Noguchi, Ryo Kaneko, Akira Orita, Izumi Fukui, Toshiaki Tomita, Kozo Suzuki, Tsutomu |
author_sort | Ohira, Takayuki |
collection | PubMed |
description | Post-transcriptional modifications have critical roles in tRNA stability and function(1–4). In thermophiles, tRNAs are heavily modified to maintain their thermal stability under extreme growth temperatures(5,6). Here we identified 2′-phosphouridine (U(p)) at position 47 of tRNAs from thermophilic archaea. U(p)47 confers thermal stability and nuclease resistance to tRNAs. Atomic structures of native archaeal tRNA showed a unique metastable core structure stabilized by U(p)47. The 2′-phosphate of U(p)47 protrudes from the tRNA core and prevents backbone rotation during thermal denaturation. In addition, we identified the arkI gene, which encodes an archaeal RNA kinase responsible for U(p)47 formation. Structural studies showed that ArkI has a non-canonical kinase motif surrounded by a positively charged patch for tRNA binding. A knockout strain of arkI grew slowly at high temperatures and exhibited a synthetic growth defect when a second tRNA-modifying enzyme was depleted. We also identified an archaeal homologue of KptA as an eraser that efficiently dephosphorylates U(p)47 in vitro and in vivo. Taken together, our findings show that U(p)47 is a reversible RNA modification mediated by ArkI and KptA that fine-tunes the structural rigidity of tRNAs under extreme environmental conditions. |
format | Online Article Text |
id | pubmed-9095486 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-90954862022-05-13 Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance Ohira, Takayuki Minowa, Keiichi Sugiyama, Kei Yamashita, Seisuke Sakaguchi, Yuriko Miyauchi, Kenjyo Noguchi, Ryo Kaneko, Akira Orita, Izumi Fukui, Toshiaki Tomita, Kozo Suzuki, Tsutomu Nature Article Post-transcriptional modifications have critical roles in tRNA stability and function(1–4). In thermophiles, tRNAs are heavily modified to maintain their thermal stability under extreme growth temperatures(5,6). Here we identified 2′-phosphouridine (U(p)) at position 47 of tRNAs from thermophilic archaea. U(p)47 confers thermal stability and nuclease resistance to tRNAs. Atomic structures of native archaeal tRNA showed a unique metastable core structure stabilized by U(p)47. The 2′-phosphate of U(p)47 protrudes from the tRNA core and prevents backbone rotation during thermal denaturation. In addition, we identified the arkI gene, which encodes an archaeal RNA kinase responsible for U(p)47 formation. Structural studies showed that ArkI has a non-canonical kinase motif surrounded by a positively charged patch for tRNA binding. A knockout strain of arkI grew slowly at high temperatures and exhibited a synthetic growth defect when a second tRNA-modifying enzyme was depleted. We also identified an archaeal homologue of KptA as an eraser that efficiently dephosphorylates U(p)47 in vitro and in vivo. Taken together, our findings show that U(p)47 is a reversible RNA modification mediated by ArkI and KptA that fine-tunes the structural rigidity of tRNAs under extreme environmental conditions. Nature Publishing Group UK 2022-04-27 2022 /pmc/articles/PMC9095486/ /pubmed/35477761 http://dx.doi.org/10.1038/s41586-022-04677-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ohira, Takayuki Minowa, Keiichi Sugiyama, Kei Yamashita, Seisuke Sakaguchi, Yuriko Miyauchi, Kenjyo Noguchi, Ryo Kaneko, Akira Orita, Izumi Fukui, Toshiaki Tomita, Kozo Suzuki, Tsutomu Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title_full | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title_fullStr | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title_full_unstemmed | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title_short | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance |
title_sort | reversible rna phosphorylation stabilizes trna for cellular thermotolerance |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9095486/ https://www.ncbi.nlm.nih.gov/pubmed/35477761 http://dx.doi.org/10.1038/s41586-022-04677-2 |
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