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Protein degradation sets the fraction of active ribosomes at vanishing growth
Growing cells adopt common basic strategies to achieve optimal resource allocation under limited resource availability. Our current understanding of such “growth laws” neglects degradation, assuming that it occurs slowly compared to the cell cycle duration. Here we argue that this assumption cannot...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098079/ https://www.ncbi.nlm.nih.gov/pubmed/35500024 http://dx.doi.org/10.1371/journal.pcbi.1010059 |
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author | Calabrese, Ludovico Grilli, Jacopo Osella, Matteo Kempes, Christopher P. Lagomarsino, Marco Cosentino Ciandrini, Luca |
author_facet | Calabrese, Ludovico Grilli, Jacopo Osella, Matteo Kempes, Christopher P. Lagomarsino, Marco Cosentino Ciandrini, Luca |
author_sort | Calabrese, Ludovico |
collection | PubMed |
description | Growing cells adopt common basic strategies to achieve optimal resource allocation under limited resource availability. Our current understanding of such “growth laws” neglects degradation, assuming that it occurs slowly compared to the cell cycle duration. Here we argue that this assumption cannot hold at slow growth, leading to important consequences. We propose a simple framework showing that at slow growth protein degradation is balanced by a fraction of “maintenance” ribosomes. Consequently, active ribosomes do not drop to zero at vanishing growth, but as growth rate diminishes, an increasing fraction of active ribosomes performs maintenance. Through a detailed analysis of compiled data, we show that the predictions of this model agree with data from E. coli and S. cerevisiae. Intriguingly, we also find that protein degradation increases at slow growth, which we interpret as a consequence of active waste management and/or recycling. Our results highlight protein turnover as an underrated factor for our understanding of growth laws across kingdoms. |
format | Online Article Text |
id | pubmed-9098079 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-90980792022-05-13 Protein degradation sets the fraction of active ribosomes at vanishing growth Calabrese, Ludovico Grilli, Jacopo Osella, Matteo Kempes, Christopher P. Lagomarsino, Marco Cosentino Ciandrini, Luca PLoS Comput Biol Research Article Growing cells adopt common basic strategies to achieve optimal resource allocation under limited resource availability. Our current understanding of such “growth laws” neglects degradation, assuming that it occurs slowly compared to the cell cycle duration. Here we argue that this assumption cannot hold at slow growth, leading to important consequences. We propose a simple framework showing that at slow growth protein degradation is balanced by a fraction of “maintenance” ribosomes. Consequently, active ribosomes do not drop to zero at vanishing growth, but as growth rate diminishes, an increasing fraction of active ribosomes performs maintenance. Through a detailed analysis of compiled data, we show that the predictions of this model agree with data from E. coli and S. cerevisiae. Intriguingly, we also find that protein degradation increases at slow growth, which we interpret as a consequence of active waste management and/or recycling. Our results highlight protein turnover as an underrated factor for our understanding of growth laws across kingdoms. Public Library of Science 2022-05-02 /pmc/articles/PMC9098079/ /pubmed/35500024 http://dx.doi.org/10.1371/journal.pcbi.1010059 Text en © 2022 Calabrese et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Calabrese, Ludovico Grilli, Jacopo Osella, Matteo Kempes, Christopher P. Lagomarsino, Marco Cosentino Ciandrini, Luca Protein degradation sets the fraction of active ribosomes at vanishing growth |
title | Protein degradation sets the fraction of active ribosomes at vanishing growth |
title_full | Protein degradation sets the fraction of active ribosomes at vanishing growth |
title_fullStr | Protein degradation sets the fraction of active ribosomes at vanishing growth |
title_full_unstemmed | Protein degradation sets the fraction of active ribosomes at vanishing growth |
title_short | Protein degradation sets the fraction of active ribosomes at vanishing growth |
title_sort | protein degradation sets the fraction of active ribosomes at vanishing growth |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098079/ https://www.ncbi.nlm.nih.gov/pubmed/35500024 http://dx.doi.org/10.1371/journal.pcbi.1010059 |
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