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Chromatin interaction–aware gene regulatory modeling with graph attention networks

Linking distal enhancers to genes and modeling their impact on target gene expression are longstanding unresolved problems in regulatory genomics and critical for interpreting noncoding genetic variation. Here, we present a new deep learning approach called GraphReg that exploits 3D interactions fro...

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Detalles Bibliográficos
Autores principales: Karbalayghareh, Alireza, Sahin, Merve, Leslie, Christina S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104700/
https://www.ncbi.nlm.nih.gov/pubmed/35396274
http://dx.doi.org/10.1101/gr.275870.121