SASpector: analysis of missing genomic regions in draft genomes of prokaryotes

SUMMARY: Missing regions in short-read assemblies of prokaryote genomes are often attributed to biases in sequencing technologies and to repetitive elements, the former resulting in low sequencing coverage of certain loci and the latter to unresolved loops in the de novo assembly graph. We developed...

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Detalles Bibliográficos
Autores principales: Lood, Cédric, Correa Rojo, Alejandro, Sinar, Deniz, Verkinderen, Emma, Lavigne, Rob, van Noort, Vera
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9113259/
https://www.ncbi.nlm.nih.gov/pubmed/35561201
http://dx.doi.org/10.1093/bioinformatics/btac208

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9113259/
https://www.ncbi.nlm.nih.gov/pubmed/35561201
http://dx.doi.org/10.1093/bioinformatics/btac208

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