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Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network

Comprehensive in vitro Proarrhythmia Assay (CiPA) projects for assessing proarrhythmic drugs suggested a logistic regression model using qNet as the Torsades de Pointes (TdP) risk assessment biomarker, obtained from in silico simulation. However, using a single in silico feature, such as qNet, canno...

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Autores principales: Jeong, Da Un, Yoo, Yedam, Marcellinus, Aroli, Kim, Ki‐Suk, Lim, Ki Moo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9124356/
https://www.ncbi.nlm.nih.gov/pubmed/35579100
http://dx.doi.org/10.1002/psp4.12803
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author Jeong, Da Un
Yoo, Yedam
Marcellinus, Aroli
Kim, Ki‐Suk
Lim, Ki Moo
author_facet Jeong, Da Un
Yoo, Yedam
Marcellinus, Aroli
Kim, Ki‐Suk
Lim, Ki Moo
author_sort Jeong, Da Un
collection PubMed
description Comprehensive in vitro Proarrhythmia Assay (CiPA) projects for assessing proarrhythmic drugs suggested a logistic regression model using qNet as the Torsades de Pointes (TdP) risk assessment biomarker, obtained from in silico simulation. However, using a single in silico feature, such as qNet, cannot reflect whole characteristics related to TdP in the entire action potential (AP) shape. Thus, this study proposed a deep convolutional neural network (CNN) model using differential action potential shapes to classify three proarrhythmic risk levels: high, intermediate, and low, considering both characteristics related to TdP not only in the depolarization phase but also the repolarization phase of AP shape. We performed an in silico simulation and got AP shapes with drug effects using half‐maximal inhibitory concentration and Hill coefficients of 28 drugs released by CiPA groups. Then, we trained the deep CNN model with the differential AP shapes of 12 drugs and tested it with those of 16 drugs. Our model had a better performance for classifying the proarrhythmic risk of drugs than the traditional logistic regression model using qNet. The classification accuracy was 98% for high‐risk level drugs, 94% for intermediate‐risk level drugs, and 89% for low‐risk level drugs.
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spelling pubmed-91243562022-05-24 Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network Jeong, Da Un Yoo, Yedam Marcellinus, Aroli Kim, Ki‐Suk Lim, Ki Moo CPT Pharmacometrics Syst Pharmacol Research Comprehensive in vitro Proarrhythmia Assay (CiPA) projects for assessing proarrhythmic drugs suggested a logistic regression model using qNet as the Torsades de Pointes (TdP) risk assessment biomarker, obtained from in silico simulation. However, using a single in silico feature, such as qNet, cannot reflect whole characteristics related to TdP in the entire action potential (AP) shape. Thus, this study proposed a deep convolutional neural network (CNN) model using differential action potential shapes to classify three proarrhythmic risk levels: high, intermediate, and low, considering both characteristics related to TdP not only in the depolarization phase but also the repolarization phase of AP shape. We performed an in silico simulation and got AP shapes with drug effects using half‐maximal inhibitory concentration and Hill coefficients of 28 drugs released by CiPA groups. Then, we trained the deep CNN model with the differential AP shapes of 12 drugs and tested it with those of 16 drugs. Our model had a better performance for classifying the proarrhythmic risk of drugs than the traditional logistic regression model using qNet. The classification accuracy was 98% for high‐risk level drugs, 94% for intermediate‐risk level drugs, and 89% for low‐risk level drugs. John Wiley and Sons Inc. 2022-05-17 2022-05 /pmc/articles/PMC9124356/ /pubmed/35579100 http://dx.doi.org/10.1002/psp4.12803 Text en © 2022 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Jeong, Da Un
Yoo, Yedam
Marcellinus, Aroli
Kim, Ki‐Suk
Lim, Ki Moo
Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title_full Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title_fullStr Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title_full_unstemmed Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title_short Proarrhythmic risk assessment of drugs by dV (m) /dt shapes using the convolutional neural network
title_sort proarrhythmic risk assessment of drugs by dv (m) /dt shapes using the convolutional neural network
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9124356/
https://www.ncbi.nlm.nih.gov/pubmed/35579100
http://dx.doi.org/10.1002/psp4.12803
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