Cargando…
ePeak: from replicated chromatin profiling data to epigenomic dynamics
We present ePeak, a Snakemake-based pipeline for the identification and quantification of reproducible peaks from raw ChIP-seq, CUT&RUN and CUT&Tag epigenomic profiling techniques. It also includes a statistical module to perform tailored differential marking and binding analysis with state...
Autores principales: | Daunesse, Maëlle, Legendre, Rachel, Varet, Hugo, Pain, Adrien, Chica, Claudia |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154330/ https://www.ncbi.nlm.nih.gov/pubmed/35664802 http://dx.doi.org/10.1093/nargab/lqac041 |
Ejemplares similares
-
EpiCompare: R package for the comparison and quality control of epigenomic peak files
por: Choi, Sera, et al.
Publicado: (2023) -
checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes
por: Varet, Hugo, et al.
Publicado: (2019) -
The CovR regulatory network drives the evolution of Group B Streptococcus virulence
por: Mazzuoli, Maria-Vittoria, et al.
Publicado: (2021) -
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data
por: Breeze, Charles E, et al.
Publicado: (2019) -
Enabling interspecies epigenomic comparison with CEpBrowser
por: Cao, Xiaoyi, et al.
Publicado: (2013)