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Calculating small-angle scattering intensity functions from electron-microscopy images
We outline procedures to calculate small-angle scattering (SAS) intensity functions from 2-dimensional electron-microscopy (EM) images. Two types of scattering systems were considered: (a) the sample is a set of particles confined to a plane; or (b) the sample is modelled as parallel, infinitely lon...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169464/ https://www.ncbi.nlm.nih.gov/pubmed/35754871 http://dx.doi.org/10.1039/d2ra00685e |
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author | Yildirim, Batuhan Washington, Adam Doutch, James Cole, Jacqueline M. |
author_facet | Yildirim, Batuhan Washington, Adam Doutch, James Cole, Jacqueline M. |
author_sort | Yildirim, Batuhan |
collection | PubMed |
description | We outline procedures to calculate small-angle scattering (SAS) intensity functions from 2-dimensional electron-microscopy (EM) images. Two types of scattering systems were considered: (a) the sample is a set of particles confined to a plane; or (b) the sample is modelled as parallel, infinitely long cylinders that extend into the image plane. In each case, an EM image is segmented into particle instances and the background, whereby coordinates and morphological parameters are computed and used to calculate the constituents of the SAS-intensity function. We compare our results with experimental SAS data, discuss limitations, both general and case specific, and outline some applications of this method which could potentially complement experimental SAS. |
format | Online Article Text |
id | pubmed-9169464 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-91694642022-06-23 Calculating small-angle scattering intensity functions from electron-microscopy images Yildirim, Batuhan Washington, Adam Doutch, James Cole, Jacqueline M. RSC Adv Chemistry We outline procedures to calculate small-angle scattering (SAS) intensity functions from 2-dimensional electron-microscopy (EM) images. Two types of scattering systems were considered: (a) the sample is a set of particles confined to a plane; or (b) the sample is modelled as parallel, infinitely long cylinders that extend into the image plane. In each case, an EM image is segmented into particle instances and the background, whereby coordinates and morphological parameters are computed and used to calculate the constituents of the SAS-intensity function. We compare our results with experimental SAS data, discuss limitations, both general and case specific, and outline some applications of this method which could potentially complement experimental SAS. The Royal Society of Chemistry 2022-06-06 /pmc/articles/PMC9169464/ /pubmed/35754871 http://dx.doi.org/10.1039/d2ra00685e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Yildirim, Batuhan Washington, Adam Doutch, James Cole, Jacqueline M. Calculating small-angle scattering intensity functions from electron-microscopy images |
title | Calculating small-angle scattering intensity functions from electron-microscopy images |
title_full | Calculating small-angle scattering intensity functions from electron-microscopy images |
title_fullStr | Calculating small-angle scattering intensity functions from electron-microscopy images |
title_full_unstemmed | Calculating small-angle scattering intensity functions from electron-microscopy images |
title_short | Calculating small-angle scattering intensity functions from electron-microscopy images |
title_sort | calculating small-angle scattering intensity functions from electron-microscopy images |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169464/ https://www.ncbi.nlm.nih.gov/pubmed/35754871 http://dx.doi.org/10.1039/d2ra00685e |
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