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Are polygenic risk scores ready for the cancer clinic?—a perspective

To realize the goals of precision medicine in complex disease, discriminative clinical risk models are needed. One approach that has been proposed is polygenic risk scores (PRSs). PRSs incorporate information about inherited genetic risk for cancer, specifically those genetic variants that are commo...

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Detalles Bibliográficos
Autores principales: Klein, Robert J., Gümüş, Zeynep H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186162/
https://www.ncbi.nlm.nih.gov/pubmed/35693291
http://dx.doi.org/10.21037/tlcr-21-698
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author Klein, Robert J.
Gümüş, Zeynep H.
author_facet Klein, Robert J.
Gümüş, Zeynep H.
author_sort Klein, Robert J.
collection PubMed
description To realize the goals of precision medicine in complex disease, discriminative clinical risk models are needed. One approach that has been proposed is polygenic risk scores (PRSs). PRSs incorporate information about inherited genetic risk for cancer, specifically those genetic variants that are common in the population. While PRSs are clearly associated with risk of cancer, there is an on-going debate on whether integrating PRSs into clinical practice have utility. Here, we present this important discussion to the cancer clinic. We argue that in cancer, the clinical utility of PRSs will depend on their actionability, or how such a score may guide clinical practice. In turn, the actionability depends on several factors. First, actionability depends on the discriminative power of the score, or how well it predicts who is at risk of the disease. Second, it depends on their comparative performance with respect to existing practice, as a score with good discriminative power will not be useful if there are better predictors used in the clinic. Finally, for a PRS to be useful there must also be available preventive actions. We discuss the strengths and challenges of utilizing a PRS in the context of each of these criteria, and provide insights on what is needed towards moving forward in translating PRSs into the cancer clinic. We further argue that in future studies, beyond predicting cancer risk, similarly developed PRS models may be of utility in predicting prognosis or treatment resistance.
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spelling pubmed-91861622022-06-11 Are polygenic risk scores ready for the cancer clinic?—a perspective Klein, Robert J. Gümüş, Zeynep H. Transl Lung Cancer Res Review Article To realize the goals of precision medicine in complex disease, discriminative clinical risk models are needed. One approach that has been proposed is polygenic risk scores (PRSs). PRSs incorporate information about inherited genetic risk for cancer, specifically those genetic variants that are common in the population. While PRSs are clearly associated with risk of cancer, there is an on-going debate on whether integrating PRSs into clinical practice have utility. Here, we present this important discussion to the cancer clinic. We argue that in cancer, the clinical utility of PRSs will depend on their actionability, or how such a score may guide clinical practice. In turn, the actionability depends on several factors. First, actionability depends on the discriminative power of the score, or how well it predicts who is at risk of the disease. Second, it depends on their comparative performance with respect to existing practice, as a score with good discriminative power will not be useful if there are better predictors used in the clinic. Finally, for a PRS to be useful there must also be available preventive actions. We discuss the strengths and challenges of utilizing a PRS in the context of each of these criteria, and provide insights on what is needed towards moving forward in translating PRSs into the cancer clinic. We further argue that in future studies, beyond predicting cancer risk, similarly developed PRS models may be of utility in predicting prognosis or treatment resistance. AME Publishing Company 2022-05 /pmc/articles/PMC9186162/ /pubmed/35693291 http://dx.doi.org/10.21037/tlcr-21-698 Text en 2022 Translational Lung Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Review Article
Klein, Robert J.
Gümüş, Zeynep H.
Are polygenic risk scores ready for the cancer clinic?—a perspective
title Are polygenic risk scores ready for the cancer clinic?—a perspective
title_full Are polygenic risk scores ready for the cancer clinic?—a perspective
title_fullStr Are polygenic risk scores ready for the cancer clinic?—a perspective
title_full_unstemmed Are polygenic risk scores ready for the cancer clinic?—a perspective
title_short Are polygenic risk scores ready for the cancer clinic?—a perspective
title_sort are polygenic risk scores ready for the cancer clinic?—a perspective
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186162/
https://www.ncbi.nlm.nih.gov/pubmed/35693291
http://dx.doi.org/10.21037/tlcr-21-698
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