ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads

SUMMARY: Viral sequence data from clinical samples frequently contain contaminating human reads, which must be removed prior to sharing for legal and ethical reasons. To enable host read removal for SARS-CoV-2 sequencing data on low-specification laptops, we developed ReadItAndKeep, a fast lightweig...

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Detalles Bibliográficos
Autores principales: Hunt, Martin, Swann, Jeremy, Constantinides, Bede, Fowler, Philip W, Iqbal, Zamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9191204/
https://www.ncbi.nlm.nih.gov/pubmed/35551365
http://dx.doi.org/10.1093/bioinformatics/btac311

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9191204/
https://www.ncbi.nlm.nih.gov/pubmed/35551365
http://dx.doi.org/10.1093/bioinformatics/btac311

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