A transcriptome software comparison for the analyses of treatments expected to give subtle gene expression responses

BACKGROUND: In this comparative study we evaluate the performance of four software tools: DNAstar-D (DESeq2), DNAstar-E (edgeR), CLC Genomics and Partek Flow for identification of differentially expressed genes (DEGs) using a transcriptome of E. coli. The RNA-seq data are from the effect of below-ba...

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Detalles Bibliográficos
Autores principales: Thawng, Cung Nawl, Smith, Geoffrey Battle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9208185/
https://www.ncbi.nlm.nih.gov/pubmed/35725382
http://dx.doi.org/10.1186/s12864-022-08673-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9208185/
https://www.ncbi.nlm.nih.gov/pubmed/35725382
http://dx.doi.org/10.1186/s12864-022-08673-8

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