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Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase
UniFrac is an important tool in microbiome research that is used for phylogenetically comparing microbiome profiles to one another (beta diversity). Striped UniFrac recently added the ability to split the problem into many independent subproblems, exhibiting nearly linear scaling but suffering from...
| Autores principales: | , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
American Society for Microbiology
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239203/ https://www.ncbi.nlm.nih.gov/pubmed/35638356 http://dx.doi.org/10.1128/msystems.00028-22 |