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Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase

UniFrac is an important tool in microbiome research that is used for phylogenetically comparing microbiome profiles to one another (beta diversity). Striped UniFrac recently added the ability to split the problem into many independent subproblems, exhibiting nearly linear scaling but suffering from...

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Detalles Bibliográficos
Autores principales:	Sfiligoi, Igor, Armstrong, George, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2022
Materias:	Observation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239203/ https://www.ncbi.nlm.nih.gov/pubmed/35638356 http://dx.doi.org/10.1128/msystems.00028-22

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