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ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment

The ParABS system is essential for prokaryotic chromosome segregation. After loading at parS on the genome, ParB (partition protein B) proteins rapidly redistribute to distances of ~15 kilobases from the loading site. It has remained puzzling how this large-distance spreading can occur along DNA loa...

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Autores principales: Tišma, Miloš, Panoukidou, Maria, Antar, Hammam, Soh, Young-Min, Barth, Roman, Pradhan, Biswajit, Barth, Anders, van der Torre, Jaco, Michieletto, Davide, Gruber, Stephan, Dekker, Cees
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242446/
https://www.ncbi.nlm.nih.gov/pubmed/35767606
http://dx.doi.org/10.1126/sciadv.abn3299
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author Tišma, Miloš
Panoukidou, Maria
Antar, Hammam
Soh, Young-Min
Barth, Roman
Pradhan, Biswajit
Barth, Anders
van der Torre, Jaco
Michieletto, Davide
Gruber, Stephan
Dekker, Cees
author_facet Tišma, Miloš
Panoukidou, Maria
Antar, Hammam
Soh, Young-Min
Barth, Roman
Pradhan, Biswajit
Barth, Anders
van der Torre, Jaco
Michieletto, Davide
Gruber, Stephan
Dekker, Cees
author_sort Tišma, Miloš
collection PubMed
description The ParABS system is essential for prokaryotic chromosome segregation. After loading at parS on the genome, ParB (partition protein B) proteins rapidly redistribute to distances of ~15 kilobases from the loading site. It has remained puzzling how this large-distance spreading can occur along DNA loaded with hundreds of proteins. Using in vitro single-molecule fluorescence imaging, we show that ParB from Bacillus subtilis can load onto DNA distantly of parS, as loaded ParB molecules themselves are found to be able to recruit additional ParB proteins from bulk. Notably, this recruitment can occur in cis but also in trans, where, at low tensions within the DNA, newly recruited ParB can bypass roadblocks as it gets loaded to spatially proximal but genomically distant DNA regions. The data are supported by molecular dynamics simulations, which show that cooperative ParB-ParB recruitment can enhance spreading. ParS-independent recruitment explains how ParB can cover substantial genomic distance during chromosome segregation, which is vital for the bacterial cell cycle.
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spelling pubmed-92424462022-07-13 ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment Tišma, Miloš Panoukidou, Maria Antar, Hammam Soh, Young-Min Barth, Roman Pradhan, Biswajit Barth, Anders van der Torre, Jaco Michieletto, Davide Gruber, Stephan Dekker, Cees Sci Adv Biomedicine and Life Sciences The ParABS system is essential for prokaryotic chromosome segregation. After loading at parS on the genome, ParB (partition protein B) proteins rapidly redistribute to distances of ~15 kilobases from the loading site. It has remained puzzling how this large-distance spreading can occur along DNA loaded with hundreds of proteins. Using in vitro single-molecule fluorescence imaging, we show that ParB from Bacillus subtilis can load onto DNA distantly of parS, as loaded ParB molecules themselves are found to be able to recruit additional ParB proteins from bulk. Notably, this recruitment can occur in cis but also in trans, where, at low tensions within the DNA, newly recruited ParB can bypass roadblocks as it gets loaded to spatially proximal but genomically distant DNA regions. The data are supported by molecular dynamics simulations, which show that cooperative ParB-ParB recruitment can enhance spreading. ParS-independent recruitment explains how ParB can cover substantial genomic distance during chromosome segregation, which is vital for the bacterial cell cycle. American Association for the Advancement of Science 2022-06-29 /pmc/articles/PMC9242446/ /pubmed/35767606 http://dx.doi.org/10.1126/sciadv.abn3299 Text en Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Biomedicine and Life Sciences
Tišma, Miloš
Panoukidou, Maria
Antar, Hammam
Soh, Young-Min
Barth, Roman
Pradhan, Biswajit
Barth, Anders
van der Torre, Jaco
Michieletto, Davide
Gruber, Stephan
Dekker, Cees
ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title_full ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title_fullStr ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title_full_unstemmed ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title_short ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment
title_sort parb proteins can bypass dna-bound roadblocks via dimer-dimer recruitment
topic Biomedicine and Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242446/
https://www.ncbi.nlm.nih.gov/pubmed/35767606
http://dx.doi.org/10.1126/sciadv.abn3299
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