Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

There are many short-read variant-calling tools, with different strengths and weaknesses. We present a tool, Minos, which combines outputs from arbitrary variant callers, increasing recall without loss of precision. We benchmark on 62 samples from three bacterial species and an outbreak of 385 Mycob...

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Detalles Bibliográficos
Autores principales: Hunt, Martin, Letcher, Brice, Malone, Kerri M., Nguyen, Giang, Hall, Michael B., Colquhoun, Rachel M., Lima, Leandro, Schatz, Michael C., Ramakrishnan, Srividya, Iqbal, Zamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9254434/
https://www.ncbi.nlm.nih.gov/pubmed/35791022
http://dx.doi.org/10.1186/s13059-022-02714-x

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9254434/
https://www.ncbi.nlm.nih.gov/pubmed/35791022
http://dx.doi.org/10.1186/s13059-022-02714-x

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