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Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones

Enantiopure α‐hydroxy ketones are important building blocks of active pharmaceutical ingredients (APIs), which can be produced by thiamine‐diphosphate‐dependent lyases, such as benzaldehyde lyase. Here we report the discovery of a novel thermostable benzaldehyde lyase from Rhodococcus erythropolis R...

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Autores principales: Peng, Martin, Siebert, Dominik L., Engqvist, Martin K. M., Niemeyer, Christof M., Rabe, Kersten S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293332/
https://www.ncbi.nlm.nih.gov/pubmed/34558792
http://dx.doi.org/10.1002/cbic.202100468
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author Peng, Martin
Siebert, Dominik L.
Engqvist, Martin K. M.
Niemeyer, Christof M.
Rabe, Kersten S.
author_facet Peng, Martin
Siebert, Dominik L.
Engqvist, Martin K. M.
Niemeyer, Christof M.
Rabe, Kersten S.
author_sort Peng, Martin
collection PubMed
description Enantiopure α‐hydroxy ketones are important building blocks of active pharmaceutical ingredients (APIs), which can be produced by thiamine‐diphosphate‐dependent lyases, such as benzaldehyde lyase. Here we report the discovery of a novel thermostable benzaldehyde lyase from Rhodococcus erythropolis R138 (ReBAL). While the overall sequence identity to the only experimentally confirmed benzaldehyde lyase from Pseudomonas fluorescens Biovar I (PfBAL) was only 65 %, comparison of a structural model of ReBAL with the crystal structure of PfBAL revealed only four divergent amino acids in the substrate binding cavity. Based on rational design, we generated two ReBAL variants, which were characterized along with the wild‐type enzyme in terms of their substrate spectrum, thermostability and biocatalytic performance in the presence of different co‐solvents. We found that the new enzyme variants have a significantly higher thermostability (up to 22 °C increase in T(50)) and a different co‐solvent‐dependent activity. Using the most stable variant immobilized in packed‐bed reactors via the SpyCatcher/SpyTag system, (R)‐benzoin was synthesized from benzaldehyde over a period of seven days with a stable space‐time‐yield of 9.3 mmol ⋅ L(‐1) ⋅ d(−1). Our work expands the important class of benzaldehyde lyases and therefore contributes to the development of continuous biocatalytic processes for the production of α‐hydroxy ketones and APIs.
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spelling pubmed-92933322022-07-20 Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones Peng, Martin Siebert, Dominik L. Engqvist, Martin K. M. Niemeyer, Christof M. Rabe, Kersten S. Chembiochem Full Papers Enantiopure α‐hydroxy ketones are important building blocks of active pharmaceutical ingredients (APIs), which can be produced by thiamine‐diphosphate‐dependent lyases, such as benzaldehyde lyase. Here we report the discovery of a novel thermostable benzaldehyde lyase from Rhodococcus erythropolis R138 (ReBAL). While the overall sequence identity to the only experimentally confirmed benzaldehyde lyase from Pseudomonas fluorescens Biovar I (PfBAL) was only 65 %, comparison of a structural model of ReBAL with the crystal structure of PfBAL revealed only four divergent amino acids in the substrate binding cavity. Based on rational design, we generated two ReBAL variants, which were characterized along with the wild‐type enzyme in terms of their substrate spectrum, thermostability and biocatalytic performance in the presence of different co‐solvents. We found that the new enzyme variants have a significantly higher thermostability (up to 22 °C increase in T(50)) and a different co‐solvent‐dependent activity. Using the most stable variant immobilized in packed‐bed reactors via the SpyCatcher/SpyTag system, (R)‐benzoin was synthesized from benzaldehyde over a period of seven days with a stable space‐time‐yield of 9.3 mmol ⋅ L(‐1) ⋅ d(−1). Our work expands the important class of benzaldehyde lyases and therefore contributes to the development of continuous biocatalytic processes for the production of α‐hydroxy ketones and APIs. John Wiley and Sons Inc. 2021-10-08 2022-04-05 /pmc/articles/PMC9293332/ /pubmed/34558792 http://dx.doi.org/10.1002/cbic.202100468 Text en © 2021 The Authors. ChemBioChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Full Papers
Peng, Martin
Siebert, Dominik L.
Engqvist, Martin K. M.
Niemeyer, Christof M.
Rabe, Kersten S.
Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title_full Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title_fullStr Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title_full_unstemmed Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title_short Modeling‐Assisted Design of Thermostable Benzaldehyde Lyases from Rhodococcus erythropolis for Continuous Production of α‐Hydroxy Ketones
title_sort modeling‐assisted design of thermostable benzaldehyde lyases from rhodococcus erythropolis for continuous production of α‐hydroxy ketones
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293332/
https://www.ncbi.nlm.nih.gov/pubmed/34558792
http://dx.doi.org/10.1002/cbic.202100468
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