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Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome

It is important to identify proline cis/trans isomers that appear in several regulatory mechanisms of proteins, and to characterize minor species that are present due to the conformational heterogeneity in intrinsically disordered proteins (IDPs). To obtain residue level information on these mobile...

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Autores principales: Sebák, Fanni, Ecsédi, Péter, Bermel, Wolfgang, Luy, Burkhard, Nyitray, László, Bodor, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299183/
https://www.ncbi.nlm.nih.gov/pubmed/34585830
http://dx.doi.org/10.1002/anie.202108361
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author Sebák, Fanni
Ecsédi, Péter
Bermel, Wolfgang
Luy, Burkhard
Nyitray, László
Bodor, Andrea
author_facet Sebák, Fanni
Ecsédi, Péter
Bermel, Wolfgang
Luy, Burkhard
Nyitray, László
Bodor, Andrea
author_sort Sebák, Fanni
collection PubMed
description It is important to identify proline cis/trans isomers that appear in several regulatory mechanisms of proteins, and to characterize minor species that are present due to the conformational heterogeneity in intrinsically disordered proteins (IDPs). To obtain residue level information on these mobile systems we introduce two (1)H(α)‐detected, proline selective, real‐time homodecoupled NMR experiments and analyze the proline abundant transactivation domain of p53. The measurements are sensitive enough to identify minor conformers present in 4–15 % amounts; moreover, we show the consequences of CK2 phosphorylation on the cis/trans‐proline equilibrium. Using our results and available literature data we perform a statistical analysis on how the amino acid type effects the cis/trans‐proline distribution. The methods are applicable under physiological conditions, they can contribute to find key proline isomers in proteins, and statistical analysis results may help in amino acid sequence optimization for biotechnological purposes.
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spelling pubmed-92991832022-07-21 Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome Sebák, Fanni Ecsédi, Péter Bermel, Wolfgang Luy, Burkhard Nyitray, László Bodor, Andrea Angew Chem Int Ed Engl Research Articles It is important to identify proline cis/trans isomers that appear in several regulatory mechanisms of proteins, and to characterize minor species that are present due to the conformational heterogeneity in intrinsically disordered proteins (IDPs). To obtain residue level information on these mobile systems we introduce two (1)H(α)‐detected, proline selective, real‐time homodecoupled NMR experiments and analyze the proline abundant transactivation domain of p53. The measurements are sensitive enough to identify minor conformers present in 4–15 % amounts; moreover, we show the consequences of CK2 phosphorylation on the cis/trans‐proline equilibrium. Using our results and available literature data we perform a statistical analysis on how the amino acid type effects the cis/trans‐proline distribution. The methods are applicable under physiological conditions, they can contribute to find key proline isomers in proteins, and statistical analysis results may help in amino acid sequence optimization for biotechnological purposes. John Wiley and Sons Inc. 2021-11-16 2022-01-03 /pmc/articles/PMC9299183/ /pubmed/34585830 http://dx.doi.org/10.1002/anie.202108361 Text en © 2021 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Sebák, Fanni
Ecsédi, Péter
Bermel, Wolfgang
Luy, Burkhard
Nyitray, László
Bodor, Andrea
Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title_full Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title_fullStr Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title_full_unstemmed Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title_short Selective (1)H(α) NMR Methods Reveal Functionally Relevant Proline cis/trans Isomers in Intrinsically Disordered Proteins: Characterization of Minor Forms, Effects of Phosphorylation, and Occurrence in Proteome
title_sort selective (1)h(α) nmr methods reveal functionally relevant proline cis/trans isomers in intrinsically disordered proteins: characterization of minor forms, effects of phosphorylation, and occurrence in proteome
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299183/
https://www.ncbi.nlm.nih.gov/pubmed/34585830
http://dx.doi.org/10.1002/anie.202108361
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