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Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity

Taurine/α‐ketoglutarate dioxygenase is an important enzyme that takes part in the cysteine catabolism process in the human body and selectively hydroxylates taurine at the C(1)‐position. Recent computational studies showed that in the gas‐phase the C(2)−H bond of taurine is substantially weaker than...

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Autores principales: Ali, Hafiz Saqib, de Visser, Sam P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304159/
https://www.ncbi.nlm.nih.gov/pubmed/34967481
http://dx.doi.org/10.1002/chem.202104167
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author Ali, Hafiz Saqib
de Visser, Sam P.
author_facet Ali, Hafiz Saqib
de Visser, Sam P.
author_sort Ali, Hafiz Saqib
collection PubMed
description Taurine/α‐ketoglutarate dioxygenase is an important enzyme that takes part in the cysteine catabolism process in the human body and selectively hydroxylates taurine at the C(1)‐position. Recent computational studies showed that in the gas‐phase the C(2)−H bond of taurine is substantially weaker than the C(1)−H bond, yet no evidence exists of 2‐hydroxytaurine products. To this end, a detailed computational study on the selectivity patterns in TauD was performed. The calculations show that the second‐coordination sphere and the protonation states of residues play a major role in guiding the enzyme to the right selectivity. Specifically, a single proton on an active site histidine residue can change the regioselectivity of the reaction through its electrostatic perturbations in the active site and effectively changes the C(1)−H and C(2)−H bond strengths of taurine. This is further emphasized by many polar and hydrogen bonding interactions of the protein cage in TauD with the substrate and the oxidant that weaken the pro‐R C(1)−H bond and triggers a chemoselective reaction process. The large cluster models reproduce the experimental free energy of activation excellently.
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spelling pubmed-93041592022-07-28 Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity Ali, Hafiz Saqib de Visser, Sam P. Chemistry Research Articles Taurine/α‐ketoglutarate dioxygenase is an important enzyme that takes part in the cysteine catabolism process in the human body and selectively hydroxylates taurine at the C(1)‐position. Recent computational studies showed that in the gas‐phase the C(2)−H bond of taurine is substantially weaker than the C(1)−H bond, yet no evidence exists of 2‐hydroxytaurine products. To this end, a detailed computational study on the selectivity patterns in TauD was performed. The calculations show that the second‐coordination sphere and the protonation states of residues play a major role in guiding the enzyme to the right selectivity. Specifically, a single proton on an active site histidine residue can change the regioselectivity of the reaction through its electrostatic perturbations in the active site and effectively changes the C(1)−H and C(2)−H bond strengths of taurine. This is further emphasized by many polar and hydrogen bonding interactions of the protein cage in TauD with the substrate and the oxidant that weaken the pro‐R C(1)−H bond and triggers a chemoselective reaction process. The large cluster models reproduce the experimental free energy of activation excellently. John Wiley and Sons Inc. 2022-01-22 2022-02-16 /pmc/articles/PMC9304159/ /pubmed/34967481 http://dx.doi.org/10.1002/chem.202104167 Text en © 2021 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ali, Hafiz Saqib
de Visser, Sam P.
Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title_full Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title_fullStr Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title_full_unstemmed Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title_short Electrostatic Perturbations in the Substrate‐Binding Pocket of Taurine/α‐Ketoglutarate Dioxygenase Determine its Selectivity
title_sort electrostatic perturbations in the substrate‐binding pocket of taurine/α‐ketoglutarate dioxygenase determine its selectivity
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304159/
https://www.ncbi.nlm.nih.gov/pubmed/34967481
http://dx.doi.org/10.1002/chem.202104167
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