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Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures

When a minor DNA component to a binary mixture is present at a weight ratio of approximately 1:50 or less, the presence of this minor donor is undetectable (or barely detectable) by standard mixture deconvolution approaches. In an attempt to retrieve probative minor donor DNA profile information, mu...

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Autores principales: Huffman, Kaitlin, Hanson, Erin, Ballantyne, Jack
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321018/
https://www.ncbi.nlm.nih.gov/pubmed/35885899
http://dx.doi.org/10.3390/genes13071117
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author Huffman, Kaitlin
Hanson, Erin
Ballantyne, Jack
author_facet Huffman, Kaitlin
Hanson, Erin
Ballantyne, Jack
author_sort Huffman, Kaitlin
collection PubMed
description When a minor DNA component to a binary mixture is present at a weight ratio of approximately 1:50 or less, the presence of this minor donor is undetectable (or barely detectable) by standard mixture deconvolution approaches. In an attempt to retrieve probative minor donor DNA profile information, multiple quintuple cell subsamples were collected from a 1:50 DNA mixture using direct single cell subsampling (DSCS) paired with probabilistic genotyping (PG), the latter validated for use with single or few cells. DSCS employs a simplified micromanipulation technique paired with an enhanced DNA profiling approach, involving direct cell lysis and a sensitive PCR process, to genotype individual cells. Multiple five-cell subsamples were used to interrogate sufficient cells from the mixture such that some of the created 5-cell “mini-mixture” subsamples contained a cell from the minor donor. The latter mini-mixture subsamples, which now comprised weight ratios of 1:4 as opposed to the bulk mixture 1:50, were analyzed with the PG systems STRmix(TM) and EuroForMix resulting in a significant probative gain of information, (LR ≅ 10(11), compared to standard bulk mixture PG methods, LR ≅ 10(1)–10(2)).
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spelling pubmed-93210182022-07-27 Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures Huffman, Kaitlin Hanson, Erin Ballantyne, Jack Genes (Basel) Article When a minor DNA component to a binary mixture is present at a weight ratio of approximately 1:50 or less, the presence of this minor donor is undetectable (or barely detectable) by standard mixture deconvolution approaches. In an attempt to retrieve probative minor donor DNA profile information, multiple quintuple cell subsamples were collected from a 1:50 DNA mixture using direct single cell subsampling (DSCS) paired with probabilistic genotyping (PG), the latter validated for use with single or few cells. DSCS employs a simplified micromanipulation technique paired with an enhanced DNA profiling approach, involving direct cell lysis and a sensitive PCR process, to genotype individual cells. Multiple five-cell subsamples were used to interrogate sufficient cells from the mixture such that some of the created 5-cell “mini-mixture” subsamples contained a cell from the minor donor. The latter mini-mixture subsamples, which now comprised weight ratios of 1:4 as opposed to the bulk mixture 1:50, were analyzed with the PG systems STRmix(TM) and EuroForMix resulting in a significant probative gain of information, (LR ≅ 10(11), compared to standard bulk mixture PG methods, LR ≅ 10(1)–10(2)). MDPI 2022-06-22 /pmc/articles/PMC9321018/ /pubmed/35885899 http://dx.doi.org/10.3390/genes13071117 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Huffman, Kaitlin
Hanson, Erin
Ballantyne, Jack
Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title_full Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title_fullStr Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title_full_unstemmed Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title_short Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures
title_sort cell subsampling recovers probative dna profile information from unresolvable/undetectable minor donors in mixtures
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321018/
https://www.ncbi.nlm.nih.gov/pubmed/35885899
http://dx.doi.org/10.3390/genes13071117
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