Exploring and mitigating potential bias when genetic instrumental variables are associated with multiple non-exposure traits in Mendelian randomization

With the increasing size and number of genome-wide association studies, individual single nucleotide polymorphisms are increasingly found to associate with multiple traits. Many different mechanisms could result in proposed genetic IVs for an exposure of interest being associated with multiple non-exposure traits, some of which could bias MR results. We describe and illustrate, through causal diagrams, a range of scenarios that could result in proposed IVs being related to non-exposure traits in MR studies. These associations could occur due to five scenarios: (i) confounding, (ii) vertical pleiotropy, (iii) horizontal pleiotropy, (iv) reverse causation and (v) selection bias. For each of these scenarios we outline steps that could be taken to explore the underlying mechanism and mitigate any resulting bias in the MR estimation. We recommend MR studies explore possible IV—non-exposure associations across a wider range of traits than is usually the case. We highlight the pros and cons of relying on sensitivity analyses without considering particular pleiotropic paths versus systematically exploring and controlling for potential pleiotropic or other biasing paths via known traits. We apply our recommendations to an illustrative example of the effect of maternal insomnia on offspring birthweight in UK Biobank. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10654-022-00874-5.