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Measuring quality of DNA sequence data via degradation
We formulate and apply a novel paradigm for characterization of genome data quality, which quantifies the effects of intentional degradation of quality. The rationale is that the higher the initial quality, the more fragile the genome and the greater the effects of degradation. We demonstrate that t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348684/ https://www.ncbi.nlm.nih.gov/pubmed/35921272 http://dx.doi.org/10.1371/journal.pone.0271970 |
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author | Karr, Alan F. Hauzel, Jason Porter, Adam A. Schaefer, Marcel |
author_facet | Karr, Alan F. Hauzel, Jason Porter, Adam A. Schaefer, Marcel |
author_sort | Karr, Alan F. |
collection | PubMed |
description | We formulate and apply a novel paradigm for characterization of genome data quality, which quantifies the effects of intentional degradation of quality. The rationale is that the higher the initial quality, the more fragile the genome and the greater the effects of degradation. We demonstrate that this phenomenon is ubiquitous, and that quantified measures of degradation can be used for multiple purposes, illustrated by outlier detection. We focus on identifying outliers that may be problematic with respect to data quality, but might also be true anomalies or even attempts to subvert the database. |
format | Online Article Text |
id | pubmed-9348684 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-93486842022-08-04 Measuring quality of DNA sequence data via degradation Karr, Alan F. Hauzel, Jason Porter, Adam A. Schaefer, Marcel PLoS One Research Article We formulate and apply a novel paradigm for characterization of genome data quality, which quantifies the effects of intentional degradation of quality. The rationale is that the higher the initial quality, the more fragile the genome and the greater the effects of degradation. We demonstrate that this phenomenon is ubiquitous, and that quantified measures of degradation can be used for multiple purposes, illustrated by outlier detection. We focus on identifying outliers that may be problematic with respect to data quality, but might also be true anomalies or even attempts to subvert the database. Public Library of Science 2022-08-03 /pmc/articles/PMC9348684/ /pubmed/35921272 http://dx.doi.org/10.1371/journal.pone.0271970 Text en © 2022 Karr et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Karr, Alan F. Hauzel, Jason Porter, Adam A. Schaefer, Marcel Measuring quality of DNA sequence data via degradation |
title | Measuring quality of DNA sequence data via degradation |
title_full | Measuring quality of DNA sequence data via degradation |
title_fullStr | Measuring quality of DNA sequence data via degradation |
title_full_unstemmed | Measuring quality of DNA sequence data via degradation |
title_short | Measuring quality of DNA sequence data via degradation |
title_sort | measuring quality of dna sequence data via degradation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348684/ https://www.ncbi.nlm.nih.gov/pubmed/35921272 http://dx.doi.org/10.1371/journal.pone.0271970 |
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