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Role of lone-pair electron localization in temperature-induced phase transitions in mimetite
The crystal structure of mimetite Pb(5)(AsO(4))(3)Cl, a phosphate with apatite structure-type has been investigated in situ at 123, 173, 273, 288, 353 and 393 K. A careful inspection of the diffraction pattern and subsequent structure refinements indicated that mimetite transforms from the monoclini...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9370212/ https://www.ncbi.nlm.nih.gov/pubmed/35975828 http://dx.doi.org/10.1107/S2052520622006254 |
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author | Cametti, Georgia Nagashima, Mariko Churakov, Sergey V. |
author_facet | Cametti, Georgia Nagashima, Mariko Churakov, Sergey V. |
author_sort | Cametti, Georgia |
collection | PubMed |
description | The crystal structure of mimetite Pb(5)(AsO(4))(3)Cl, a phosphate with apatite structure-type has been investigated in situ at 123, 173, 273, 288, 353 and 393 K. A careful inspection of the diffraction pattern and subsequent structure refinements indicated that mimetite transforms from the monoclinic to the hexagonal polymorph with increasing temperature. At 123 K, a monoclinic superstructure, mimetite-2M, with cell parameters a = 20.4487 (9), b = 7.4362 (2), c = 20.4513 (9) Å, β = 119.953 (6)°, V = 2694.5 (2) Å(3) and space group P2(1) was observed. From 173 to 353 K, the reflections of the supercell were evident only along one direction of the corresponding hexagonal apatite-cell and the structure transforms to the polymorph mimetite-M with space group P2(1)/b and unit-cell parameters a = 10.2378 (3), b = 20.4573 (7), c = 7.4457 (2) Å, β = 120.039 (5)°, V = 1349.96 (9) Å(3). Only at higher temperature, i.e. 393 K, does mimetite adopt the hexagonal space group P6(3)/m characteristic of apatite structure-types. The role of the electron lone pairs of Pb atoms in the phase transition was investigated through the analysis of the electron localization function (ELF) calculated based on the DFT-geometry optimized structures of the three polymorphs. The changes in spatial distribution of the 6s (2) electron density during the phase transitions were explored by means of the Wannier Function Centres (WFCs) derived from ab initio molecular dynamics trajectories. In the high-temperature hexagonal structure the 6s (2) electrons are spherically symmetric relative to the position of Pb atoms. At low temperature the maximum of 6s (2) electron density is displaced relative to the position of Pb atom contributing to the polar interaction in the monoclinic polymorphs. |
format | Online Article Text |
id | pubmed-9370212 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-93702122022-08-15 Role of lone-pair electron localization in temperature-induced phase transitions in mimetite Cametti, Georgia Nagashima, Mariko Churakov, Sergey V. Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers The crystal structure of mimetite Pb(5)(AsO(4))(3)Cl, a phosphate with apatite structure-type has been investigated in situ at 123, 173, 273, 288, 353 and 393 K. A careful inspection of the diffraction pattern and subsequent structure refinements indicated that mimetite transforms from the monoclinic to the hexagonal polymorph with increasing temperature. At 123 K, a monoclinic superstructure, mimetite-2M, with cell parameters a = 20.4487 (9), b = 7.4362 (2), c = 20.4513 (9) Å, β = 119.953 (6)°, V = 2694.5 (2) Å(3) and space group P2(1) was observed. From 173 to 353 K, the reflections of the supercell were evident only along one direction of the corresponding hexagonal apatite-cell and the structure transforms to the polymorph mimetite-M with space group P2(1)/b and unit-cell parameters a = 10.2378 (3), b = 20.4573 (7), c = 7.4457 (2) Å, β = 120.039 (5)°, V = 1349.96 (9) Å(3). Only at higher temperature, i.e. 393 K, does mimetite adopt the hexagonal space group P6(3)/m characteristic of apatite structure-types. The role of the electron lone pairs of Pb atoms in the phase transition was investigated through the analysis of the electron localization function (ELF) calculated based on the DFT-geometry optimized structures of the three polymorphs. The changes in spatial distribution of the 6s (2) electron density during the phase transitions were explored by means of the Wannier Function Centres (WFCs) derived from ab initio molecular dynamics trajectories. In the high-temperature hexagonal structure the 6s (2) electrons are spherically symmetric relative to the position of Pb atoms. At low temperature the maximum of 6s (2) electron density is displaced relative to the position of Pb atom contributing to the polar interaction in the monoclinic polymorphs. International Union of Crystallography 2022-07-09 /pmc/articles/PMC9370212/ /pubmed/35975828 http://dx.doi.org/10.1107/S2052520622006254 Text en © Georgia Cametti et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Cametti, Georgia Nagashima, Mariko Churakov, Sergey V. Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title | Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title_full | Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title_fullStr | Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title_full_unstemmed | Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title_short | Role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
title_sort | role of lone-pair electron localization in temperature-induced phase transitions in mimetite |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9370212/ https://www.ncbi.nlm.nih.gov/pubmed/35975828 http://dx.doi.org/10.1107/S2052520622006254 |
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