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Polygenic Risk Score Improves Cataract Prediction in East Asian Population
Cataracts, characterized by crystalline lens opacities in human eyes, is the leading cause of blindness globally. Due to its multifactorial complexity, the molecular mechanisms remain poorly understood. Larger cohorts of genome-wide association studies (GWAS) are needed to investigate cataracts’ gen...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406175/ https://www.ncbi.nlm.nih.gov/pubmed/36009466 http://dx.doi.org/10.3390/biomedicines10081920 |
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author | Hsu, Chih-Chien Chuang, Hao-Kai Hsiao, Yu-Jer Teng, Yuan-Chi Chiang, Pin-Hsuan Wang, Yu-Jun Lin, Ting-Yi Tsai, Ping-Hsing Weng, Chang-Chi Lin, Tai-Chi Hwang, De-Kuang Hsieh, Ai-Ru |
author_facet | Hsu, Chih-Chien Chuang, Hao-Kai Hsiao, Yu-Jer Teng, Yuan-Chi Chiang, Pin-Hsuan Wang, Yu-Jun Lin, Ting-Yi Tsai, Ping-Hsing Weng, Chang-Chi Lin, Tai-Chi Hwang, De-Kuang Hsieh, Ai-Ru |
author_sort | Hsu, Chih-Chien |
collection | PubMed |
description | Cataracts, characterized by crystalline lens opacities in human eyes, is the leading cause of blindness globally. Due to its multifactorial complexity, the molecular mechanisms remain poorly understood. Larger cohorts of genome-wide association studies (GWAS) are needed to investigate cataracts’ genetic basis. In this study, a GWAS was performed on the largest Han population to date, analyzing a total of 7079 patients and 13,256 controls from the Taiwan Biobank (TWB) 2.0 cohort. Two cataract-associated SNPs with an adjustment of p < 1 × 10(−7) in the older groups and nine SNPs with an adjustment of p < 1 × 10(−6) in the younger group were identified. Except for the reported AGMO in animal models, most variations, including rs74774546 in GJA1 and rs237885 in OXTR, were not identified before this study. Furthermore, a polygenic risk score (PRS) was created for the young and old populations to identify high-risk cataract individuals, with areas under the receiver operating curve (AUROCs) of 0.829 and 0.785, respectively, after covariate adjustments. Younger individuals had 17.45 times the risk while older people had 10.97 times the risk when comparing individuals in the highest and lowest PRS quantiles. Validation analysis on an independent TWB1.0 cohort revealed AUROCs of 0.744 and 0.659. |
format | Online Article Text |
id | pubmed-9406175 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94061752022-08-26 Polygenic Risk Score Improves Cataract Prediction in East Asian Population Hsu, Chih-Chien Chuang, Hao-Kai Hsiao, Yu-Jer Teng, Yuan-Chi Chiang, Pin-Hsuan Wang, Yu-Jun Lin, Ting-Yi Tsai, Ping-Hsing Weng, Chang-Chi Lin, Tai-Chi Hwang, De-Kuang Hsieh, Ai-Ru Biomedicines Article Cataracts, characterized by crystalline lens opacities in human eyes, is the leading cause of blindness globally. Due to its multifactorial complexity, the molecular mechanisms remain poorly understood. Larger cohorts of genome-wide association studies (GWAS) are needed to investigate cataracts’ genetic basis. In this study, a GWAS was performed on the largest Han population to date, analyzing a total of 7079 patients and 13,256 controls from the Taiwan Biobank (TWB) 2.0 cohort. Two cataract-associated SNPs with an adjustment of p < 1 × 10(−7) in the older groups and nine SNPs with an adjustment of p < 1 × 10(−6) in the younger group were identified. Except for the reported AGMO in animal models, most variations, including rs74774546 in GJA1 and rs237885 in OXTR, were not identified before this study. Furthermore, a polygenic risk score (PRS) was created for the young and old populations to identify high-risk cataract individuals, with areas under the receiver operating curve (AUROCs) of 0.829 and 0.785, respectively, after covariate adjustments. Younger individuals had 17.45 times the risk while older people had 10.97 times the risk when comparing individuals in the highest and lowest PRS quantiles. Validation analysis on an independent TWB1.0 cohort revealed AUROCs of 0.744 and 0.659. MDPI 2022-08-08 /pmc/articles/PMC9406175/ /pubmed/36009466 http://dx.doi.org/10.3390/biomedicines10081920 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hsu, Chih-Chien Chuang, Hao-Kai Hsiao, Yu-Jer Teng, Yuan-Chi Chiang, Pin-Hsuan Wang, Yu-Jun Lin, Ting-Yi Tsai, Ping-Hsing Weng, Chang-Chi Lin, Tai-Chi Hwang, De-Kuang Hsieh, Ai-Ru Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title | Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title_full | Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title_fullStr | Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title_full_unstemmed | Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title_short | Polygenic Risk Score Improves Cataract Prediction in East Asian Population |
title_sort | polygenic risk score improves cataract prediction in east asian population |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406175/ https://www.ncbi.nlm.nih.gov/pubmed/36009466 http://dx.doi.org/10.3390/biomedicines10081920 |
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