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BubbleGun: enumerating bubbles and superbubbles in genome graphs

MOTIVATION: With the fast development of sequencing technology, accurate de novo genome assembly is now possible even for larger genomes. Graph-based representations of genomes arise both as part of the assembly process, but also in the context of pangenomes representing a population. In both cases,...

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Detalles Bibliográficos
Autores principales: Dabbaghie, Fawaz, Ebler, Jana, Marschall, Tobias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9438957/
https://www.ncbi.nlm.nih.gov/pubmed/35799353
http://dx.doi.org/10.1093/bioinformatics/btac448