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Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data

[Image: see text] Pharmacokinetic research plays an important role in the development of new drugs. Accurate predictions of human pharmacokinetic parameters are essential for the success of clinical trials. Clearance (CL) and volume of distribution (Vd) are important factors for evaluating pharmacok...

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Autores principales: Iwata, Hiroaki, Matsuo, Tatsuru, Mamada, Hideaki, Motomura, Takahisa, Matsushita, Mayumi, Fujiwara, Takeshi, Maeda, Kazuya, Handa, Koichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472274/
https://www.ncbi.nlm.nih.gov/pubmed/35993595
http://dx.doi.org/10.1021/acs.jcim.2c00318
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author Iwata, Hiroaki
Matsuo, Tatsuru
Mamada, Hideaki
Motomura, Takahisa
Matsushita, Mayumi
Fujiwara, Takeshi
Maeda, Kazuya
Handa, Koichi
author_facet Iwata, Hiroaki
Matsuo, Tatsuru
Mamada, Hideaki
Motomura, Takahisa
Matsushita, Mayumi
Fujiwara, Takeshi
Maeda, Kazuya
Handa, Koichi
author_sort Iwata, Hiroaki
collection PubMed
description [Image: see text] Pharmacokinetic research plays an important role in the development of new drugs. Accurate predictions of human pharmacokinetic parameters are essential for the success of clinical trials. Clearance (CL) and volume of distribution (Vd) are important factors for evaluating pharmacokinetic properties, and many previous studies have attempted to use computational methods to extrapolate these values from nonclinical laboratory animal models to human subjects. However, it is difficult to obtain sufficient, comprehensive experimental data from these animal models, and many studies are missing critical values. This means that studies using nonclinical data as explanatory variables can only apply a small number of compounds to their model training. In this study, we perform missing-value imputation and feature selection on nonclinical data to increase the number of training compounds and nonclinical datasets available for these kinds of studies. We could obtain novel models for total body clearance (CL(tot)) and steady-state Vd (Vd(ss)) (CL(tot): geometric mean fold error [GMFE], 1.92; percentage within 2-fold error, 66.5%; Vd(ss): GMFE, 1.64; percentage within 2-fold error, 71.1%). These accuracies were comparable to the conventional animal scale-up models. Then, this method differs from animal scale-up methods because it does not require animal experiments, which continue to become more strictly regulated as time passes.
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spelling pubmed-94722742022-09-15 Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data Iwata, Hiroaki Matsuo, Tatsuru Mamada, Hideaki Motomura, Takahisa Matsushita, Mayumi Fujiwara, Takeshi Maeda, Kazuya Handa, Koichi J Chem Inf Model [Image: see text] Pharmacokinetic research plays an important role in the development of new drugs. Accurate predictions of human pharmacokinetic parameters are essential for the success of clinical trials. Clearance (CL) and volume of distribution (Vd) are important factors for evaluating pharmacokinetic properties, and many previous studies have attempted to use computational methods to extrapolate these values from nonclinical laboratory animal models to human subjects. However, it is difficult to obtain sufficient, comprehensive experimental data from these animal models, and many studies are missing critical values. This means that studies using nonclinical data as explanatory variables can only apply a small number of compounds to their model training. In this study, we perform missing-value imputation and feature selection on nonclinical data to increase the number of training compounds and nonclinical datasets available for these kinds of studies. We could obtain novel models for total body clearance (CL(tot)) and steady-state Vd (Vd(ss)) (CL(tot): geometric mean fold error [GMFE], 1.92; percentage within 2-fold error, 66.5%; Vd(ss): GMFE, 1.64; percentage within 2-fold error, 71.1%). These accuracies were comparable to the conventional animal scale-up models. Then, this method differs from animal scale-up methods because it does not require animal experiments, which continue to become more strictly regulated as time passes. American Chemical Society 2022-08-22 2022-09-12 /pmc/articles/PMC9472274/ /pubmed/35993595 http://dx.doi.org/10.1021/acs.jcim.2c00318 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Iwata, Hiroaki
Matsuo, Tatsuru
Mamada, Hideaki
Motomura, Takahisa
Matsushita, Mayumi
Fujiwara, Takeshi
Maeda, Kazuya
Handa, Koichi
Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title_full Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title_fullStr Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title_full_unstemmed Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title_short Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data
title_sort predicting total drug clearance and volumes of distribution using the machine learning-mediated multimodal method through the imputation of various nonclinical data
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9472274/
https://www.ncbi.nlm.nih.gov/pubmed/35993595
http://dx.doi.org/10.1021/acs.jcim.2c00318
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