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PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index

MOTIVATION: Sequence alignment is one of the first steps in many modern genomic analyses, such as variant detection, transcript abundance estimation and metagenomic profiling. Unfortunately, it is often a computationally expensive procedure. As the quantity of data and wealth of different assays and...

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Detalles Bibliográficos
Autores principales: Almodaresi, Fatemeh, Zakeri, Mohsen, Patro, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9502150/
https://www.ncbi.nlm.nih.gov/pubmed/34117875
http://dx.doi.org/10.1093/bioinformatics/btab408