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Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable

Physiologically-based pharmacokinetic and cellular kinetic models are used extensively to predict concentration profiles of drugs or adoptively transferred cells in patients and laboratory animals. Models are fit to data by the numerical optimisation of appropriate parameter values. When quantities...

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Autores principales: Brown, Liam V., Coles, Mark C., McConnell, Mark, Ratushny, Alexander V., Gaffney, Eamonn A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508223/
https://www.ncbi.nlm.nih.gov/pubmed/35933452
http://dx.doi.org/10.1007/s10928-022-09819-7
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author Brown, Liam V.
Coles, Mark C.
McConnell, Mark
Ratushny, Alexander V.
Gaffney, Eamonn A.
author_facet Brown, Liam V.
Coles, Mark C.
McConnell, Mark
Ratushny, Alexander V.
Gaffney, Eamonn A.
author_sort Brown, Liam V.
collection PubMed
description Physiologically-based pharmacokinetic and cellular kinetic models are used extensively to predict concentration profiles of drugs or adoptively transferred cells in patients and laboratory animals. Models are fit to data by the numerical optimisation of appropriate parameter values. When quantities such as the area under the curve are all that is desired, only a close qualitative fit to data is required. When the biological interpretation of the model that produced the fit is important, an assessment of uncertainties is often also warranted. Often, a goal of fitting PBPK models to data is to estimate parameter values, which can then be used to assess characteristics of the fit system or applied to inform new modelling efforts and extrapolation, to inform a prediction under new conditions. However, the parameters that yield a particular model output may not necessarily be unique, in which case the parameters are said to be unidentifiable. We show that the parameters in three published physiologically-based pharmacokinetic models are practically (deterministically) unidentifiable and that it is challenging to assess the associated parameter uncertainty with simple curve fitting techniques. This result could affect many physiologically-based pharmacokinetic models, and we advocate more widespread use of thorough techniques and analyses to address these issues, such as established Markov Chain Monte Carlo and Bayesian methodologies. Greater handling and reporting of uncertainty and identifiability of fit parameters would directly and positively impact interpretation and translation for physiologically-based model applications, enhancing their capacity to inform new model development efforts and extrapolation in support of future clinical decision-making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10928-022-09819-7.
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spelling pubmed-95082232022-09-25 Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable Brown, Liam V. Coles, Mark C. McConnell, Mark Ratushny, Alexander V. Gaffney, Eamonn A. J Pharmacokinet Pharmacodyn Original Paper Physiologically-based pharmacokinetic and cellular kinetic models are used extensively to predict concentration profiles of drugs or adoptively transferred cells in patients and laboratory animals. Models are fit to data by the numerical optimisation of appropriate parameter values. When quantities such as the area under the curve are all that is desired, only a close qualitative fit to data is required. When the biological interpretation of the model that produced the fit is important, an assessment of uncertainties is often also warranted. Often, a goal of fitting PBPK models to data is to estimate parameter values, which can then be used to assess characteristics of the fit system or applied to inform new modelling efforts and extrapolation, to inform a prediction under new conditions. However, the parameters that yield a particular model output may not necessarily be unique, in which case the parameters are said to be unidentifiable. We show that the parameters in three published physiologically-based pharmacokinetic models are practically (deterministically) unidentifiable and that it is challenging to assess the associated parameter uncertainty with simple curve fitting techniques. This result could affect many physiologically-based pharmacokinetic models, and we advocate more widespread use of thorough techniques and analyses to address these issues, such as established Markov Chain Monte Carlo and Bayesian methodologies. Greater handling and reporting of uncertainty and identifiability of fit parameters would directly and positively impact interpretation and translation for physiologically-based model applications, enhancing their capacity to inform new model development efforts and extrapolation in support of future clinical decision-making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10928-022-09819-7. Springer US 2022-08-06 2022 /pmc/articles/PMC9508223/ /pubmed/35933452 http://dx.doi.org/10.1007/s10928-022-09819-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Paper
Brown, Liam V.
Coles, Mark C.
McConnell, Mark
Ratushny, Alexander V.
Gaffney, Eamonn A.
Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title_full Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title_fullStr Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title_full_unstemmed Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title_short Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
title_sort analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9508223/
https://www.ncbi.nlm.nih.gov/pubmed/35933452
http://dx.doi.org/10.1007/s10928-022-09819-7
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