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Tissue-specific impacts of aging and genetics on gene expression patterns in humans

Age is the primary risk factor for many common human diseases. Here, we quantify the relative contributions of genetics and aging to gene expression patterns across 27 tissues from 948 humans. We show that the predictive power of expression quantitative trait loci is impacted by age in many tissues....

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Autores principales: Yamamoto, Ryo, Chung, Ryan, Vazquez, Juan Manuel, Sheng, Huanjie, Steinberg, Philippa L., Ioannidis, Nilah M., Sudmant, Peter H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9530233/
https://www.ncbi.nlm.nih.gov/pubmed/36192477
http://dx.doi.org/10.1038/s41467-022-33509-0
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author Yamamoto, Ryo
Chung, Ryan
Vazquez, Juan Manuel
Sheng, Huanjie
Steinberg, Philippa L.
Ioannidis, Nilah M.
Sudmant, Peter H.
author_facet Yamamoto, Ryo
Chung, Ryan
Vazquez, Juan Manuel
Sheng, Huanjie
Steinberg, Philippa L.
Ioannidis, Nilah M.
Sudmant, Peter H.
author_sort Yamamoto, Ryo
collection PubMed
description Age is the primary risk factor for many common human diseases. Here, we quantify the relative contributions of genetics and aging to gene expression patterns across 27 tissues from 948 humans. We show that the predictive power of expression quantitative trait loci is impacted by age in many tissues. Jointly modelling the contributions of age and genetics to transcript level variation we find expression heritability (h(2)) is consistent among tissues while the contribution of aging varies by >20-fold with [Formula: see text] in 5 tissues. We find that while the force of purifying selection is stronger on genes expressed early versus late in life (Medawar’s hypothesis), several highly proliferative tissues exhibit the opposite pattern. These non-Medawarian tissues exhibit high rates of cancer and age-of-expression-associated somatic mutations. In contrast, genes under genetic control are under relaxed constraint. Together, we demonstrate the distinct roles of aging and genetics on expression phenotypes.
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spelling pubmed-95302332022-10-05 Tissue-specific impacts of aging and genetics on gene expression patterns in humans Yamamoto, Ryo Chung, Ryan Vazquez, Juan Manuel Sheng, Huanjie Steinberg, Philippa L. Ioannidis, Nilah M. Sudmant, Peter H. Nat Commun Article Age is the primary risk factor for many common human diseases. Here, we quantify the relative contributions of genetics and aging to gene expression patterns across 27 tissues from 948 humans. We show that the predictive power of expression quantitative trait loci is impacted by age in many tissues. Jointly modelling the contributions of age and genetics to transcript level variation we find expression heritability (h(2)) is consistent among tissues while the contribution of aging varies by >20-fold with [Formula: see text] in 5 tissues. We find that while the force of purifying selection is stronger on genes expressed early versus late in life (Medawar’s hypothesis), several highly proliferative tissues exhibit the opposite pattern. These non-Medawarian tissues exhibit high rates of cancer and age-of-expression-associated somatic mutations. In contrast, genes under genetic control are under relaxed constraint. Together, we demonstrate the distinct roles of aging and genetics on expression phenotypes. Nature Publishing Group UK 2022-10-03 /pmc/articles/PMC9530233/ /pubmed/36192477 http://dx.doi.org/10.1038/s41467-022-33509-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yamamoto, Ryo
Chung, Ryan
Vazquez, Juan Manuel
Sheng, Huanjie
Steinberg, Philippa L.
Ioannidis, Nilah M.
Sudmant, Peter H.
Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title_full Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title_fullStr Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title_full_unstemmed Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title_short Tissue-specific impacts of aging and genetics on gene expression patterns in humans
title_sort tissue-specific impacts of aging and genetics on gene expression patterns in humans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9530233/
https://www.ncbi.nlm.nih.gov/pubmed/36192477
http://dx.doi.org/10.1038/s41467-022-33509-0
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