KAGE: fast alignment-free graph-based genotyping of SNPs and short indels

Genotyping is a core application of high-throughput sequencing. We present KAGE, a genotyper for SNPs and short indels that is inspired by recent developments within graph-based genome representations and alignment-free methods. KAGE uses a pan-genome representation of the population to efficiently...

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Detalles Bibliográficos
Autores principales: Grytten, Ivar, Dagestad Rand, Knut, Sandve, Geir Kjetil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531401/
https://www.ncbi.nlm.nih.gov/pubmed/36195962
http://dx.doi.org/10.1186/s13059-022-02771-2

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531401/
https://www.ncbi.nlm.nih.gov/pubmed/36195962
http://dx.doi.org/10.1186/s13059-022-02771-2

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