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KAGE: fast alignment-free graph-based genotyping of SNPs and short indels
Genotyping is a core application of high-throughput sequencing. We present KAGE, a genotyper for SNPs and short indels that is inspired by recent developments within graph-based genome representations and alignment-free methods. KAGE uses a pan-genome representation of the population to efficiently...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531401/ https://www.ncbi.nlm.nih.gov/pubmed/36195962 http://dx.doi.org/10.1186/s13059-022-02771-2 |