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In silico analysis of a SLC6A4 G100V mutation in lung cancers

SLC6A4 is a serotonin re-uptake transporter which has been a target for anti-depressant therapies but recently some mutations have been described in cancer cells. Here, we characterize mutations in SLC6A4 that appear in cancer cells. We employed several validated computational and artificial intelli...

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Autores principales: Pappula, Amrit L, Gibson, Louis N, Bouley, Renee A, Petreaca, Ruben C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Caltech Library 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9554669/
https://www.ncbi.nlm.nih.gov/pubmed/36247322
http://dx.doi.org/10.17912/micropub.biology.000645
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author Pappula, Amrit L
Gibson, Louis N
Bouley, Renee A
Petreaca, Ruben C
author_facet Pappula, Amrit L
Gibson, Louis N
Bouley, Renee A
Petreaca, Ruben C
author_sort Pappula, Amrit L
collection PubMed
description SLC6A4 is a serotonin re-uptake transporter which has been a target for anti-depressant therapies but recently some mutations have been described in cancer cells. Here, we characterize mutations in SLC6A4 that appear in cancer cells. We employed several validated computational and artificial intelligence algorithms to characterize the mutations. We identified a previously uncharacterized G100V mutation in lung cancers. In sillico structural analysis reveals that this mutation may affect SLC6A4 ligand binding and subsequently its function. We also identified several other mutations that may affect the structure of the protein. This preliminary analysis highlights the role of SLC6A4 in human cancers.
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spelling pubmed-95546692022-10-13 In silico analysis of a SLC6A4 G100V mutation in lung cancers Pappula, Amrit L Gibson, Louis N Bouley, Renee A Petreaca, Ruben C MicroPubl Biol New Finding SLC6A4 is a serotonin re-uptake transporter which has been a target for anti-depressant therapies but recently some mutations have been described in cancer cells. Here, we characterize mutations in SLC6A4 that appear in cancer cells. We employed several validated computational and artificial intelligence algorithms to characterize the mutations. We identified a previously uncharacterized G100V mutation in lung cancers. In sillico structural analysis reveals that this mutation may affect SLC6A4 ligand binding and subsequently its function. We also identified several other mutations that may affect the structure of the protein. This preliminary analysis highlights the role of SLC6A4 in human cancers. Caltech Library 2022-09-27 /pmc/articles/PMC9554669/ /pubmed/36247322 http://dx.doi.org/10.17912/micropub.biology.000645 Text en Copyright: © 2022 by the authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle New Finding
Pappula, Amrit L
Gibson, Louis N
Bouley, Renee A
Petreaca, Ruben C
In silico analysis of a SLC6A4 G100V mutation in lung cancers
title In silico analysis of a SLC6A4 G100V mutation in lung cancers
title_full In silico analysis of a SLC6A4 G100V mutation in lung cancers
title_fullStr In silico analysis of a SLC6A4 G100V mutation in lung cancers
title_full_unstemmed In silico analysis of a SLC6A4 G100V mutation in lung cancers
title_short In silico analysis of a SLC6A4 G100V mutation in lung cancers
title_sort in silico analysis of a slc6a4 g100v mutation in lung cancers
topic New Finding
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9554669/
https://www.ncbi.nlm.nih.gov/pubmed/36247322
http://dx.doi.org/10.17912/micropub.biology.000645
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