ntHash2: recursive spaced seed hashing for nucleotide sequences

MOTIVATION: Spaced seeds are robust alternatives to k-mers in analyzing nucleotide sequences with high base mismatch rates. Hashing is also crucial for efficiently storing abundant sequence data. Here, we introduce ntHash2, a fast algorithm for spaced seed hashing that can be integrated into various...

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Detalles Bibliográficos
Autores principales: Kazemi, Parham, Wong, Johnathan, Nikolić, Vladimir, Mohamadi, Hamid, Warren, René L, Birol, Inanç
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563681/
https://www.ncbi.nlm.nih.gov/pubmed/36000872
http://dx.doi.org/10.1093/bioinformatics/btac564

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563681/
https://www.ncbi.nlm.nih.gov/pubmed/36000872
http://dx.doi.org/10.1093/bioinformatics/btac564

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