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ntHash2: recursive spaced seed hashing for nucleotide sequences
MOTIVATION: Spaced seeds are robust alternatives to k-mers in analyzing nucleotide sequences with high base mismatch rates. Hashing is also crucial for efficiently storing abundant sequence data. Here, we introduce ntHash2, a fast algorithm for spaced seed hashing that can be integrated into various...
| Autores principales: | , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563681/ https://www.ncbi.nlm.nih.gov/pubmed/36000872 http://dx.doi.org/10.1093/bioinformatics/btac564 |