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Theory of local k-mer selection with applications to long-read alignment

MOTIVATION: Selecting a subset of k-mers in a string in a local manner is a common task in bioinformatics tools for speeding up computation. Arguably the most well-known and common method is the minimizer technique, which selects the ‘lowest-ordered’ k-mer in a sliding window. Recently, it has been...

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Detalles Bibliográficos
Autores principales: Shaw, Jim, Yu, Yun William
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563685/
https://www.ncbi.nlm.nih.gov/pubmed/36124869
http://dx.doi.org/10.1093/bioinformatics/btab790