Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python

MOTIVATION: Computational systems biology analyses typically make use of multiple software and their dependencies, which are often run across heterogeneous compute environments. This can introduce differences in performance and reproducibility. Capturing metadata (e.g. package versions, GPU model) c...

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Detalles Bibliográficos
Autores principales: Lubbock, Alexander L R, Lopez, Carlos F
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563693/
https://www.ncbi.nlm.nih.gov/pubmed/36000837
http://dx.doi.org/10.1093/bioinformatics/btac580

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563693/
https://www.ncbi.nlm.nih.gov/pubmed/36000837
http://dx.doi.org/10.1093/bioinformatics/btac580

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