Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2

Optimizing and automating a protocol for 16S microbiome data analysis with QIIME2 is a challenging task. It involves a multi-step process, and multiple parameters and options that need to be tested and determined. In this article, we describe Snaq, a snakemake pipeline that helps automate and optimi...

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Detalles Bibliográficos
Autores principales: Mohsen, Attayeb, Chen, Yi-An, Allendes Osorio, Rodolfo S., Higuchi, Chihiro, Mizuguchi, Kenji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580898/
https://www.ncbi.nlm.nih.gov/pubmed/36304319
http://dx.doi.org/10.3389/fbinf.2022.893933

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580898/
https://www.ncbi.nlm.nih.gov/pubmed/36304319
http://dx.doi.org/10.3389/fbinf.2022.893933

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