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CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase

Pyruvate carboxylase (PC) is a tetrameric enzyme that contains two active sites per subunit that catalyze two consecutive reactions. A mobile domain with an attached prosthetic biotin links both reactions, an initial biotin carboxylation and the subsequent carboxyl transfer to pyruvate substrate to...

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Autores principales: López-Alonso, Jorge Pedro, Lázaro, Melisa, Gil-Cartón, David, Choi, Philip H., Dodu, Alexandra, Tong, Liang, Valle, Mikel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581989/
https://www.ncbi.nlm.nih.gov/pubmed/36261450
http://dx.doi.org/10.1038/s41467-022-33987-2
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author López-Alonso, Jorge Pedro
Lázaro, Melisa
Gil-Cartón, David
Choi, Philip H.
Dodu, Alexandra
Tong, Liang
Valle, Mikel
author_facet López-Alonso, Jorge Pedro
Lázaro, Melisa
Gil-Cartón, David
Choi, Philip H.
Dodu, Alexandra
Tong, Liang
Valle, Mikel
author_sort López-Alonso, Jorge Pedro
collection PubMed
description Pyruvate carboxylase (PC) is a tetrameric enzyme that contains two active sites per subunit that catalyze two consecutive reactions. A mobile domain with an attached prosthetic biotin links both reactions, an initial biotin carboxylation and the subsequent carboxyl transfer to pyruvate substrate to produce oxaloacetate. Reaction sites are at long distance, and there are several co-factors that play as allosteric regulators. Here, using cryoEM we explore the structure of active PC tetramers focusing on active sites and on the conformational space of the oligomers. The results capture the mobile domain at both active sites and expose catalytic steps of both reactions at high resolution, allowing the identification of substrates and products. The analysis of catalytically active PC tetramers reveals the role of certain motions during enzyme functioning, and the structural changes in the presence of additional cofactors expose the mechanism for allosteric regulation.
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spelling pubmed-95819892022-10-21 CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase López-Alonso, Jorge Pedro Lázaro, Melisa Gil-Cartón, David Choi, Philip H. Dodu, Alexandra Tong, Liang Valle, Mikel Nat Commun Article Pyruvate carboxylase (PC) is a tetrameric enzyme that contains two active sites per subunit that catalyze two consecutive reactions. A mobile domain with an attached prosthetic biotin links both reactions, an initial biotin carboxylation and the subsequent carboxyl transfer to pyruvate substrate to produce oxaloacetate. Reaction sites are at long distance, and there are several co-factors that play as allosteric regulators. Here, using cryoEM we explore the structure of active PC tetramers focusing on active sites and on the conformational space of the oligomers. The results capture the mobile domain at both active sites and expose catalytic steps of both reactions at high resolution, allowing the identification of substrates and products. The analysis of catalytically active PC tetramers reveals the role of certain motions during enzyme functioning, and the structural changes in the presence of additional cofactors expose the mechanism for allosteric regulation. Nature Publishing Group UK 2022-10-19 /pmc/articles/PMC9581989/ /pubmed/36261450 http://dx.doi.org/10.1038/s41467-022-33987-2 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
López-Alonso, Jorge Pedro
Lázaro, Melisa
Gil-Cartón, David
Choi, Philip H.
Dodu, Alexandra
Tong, Liang
Valle, Mikel
CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title_full CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title_fullStr CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title_full_unstemmed CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title_short CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
title_sort cryoem structural exploration of catalytically active enzyme pyruvate carboxylase
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581989/
https://www.ncbi.nlm.nih.gov/pubmed/36261450
http://dx.doi.org/10.1038/s41467-022-33987-2
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