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Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids

Amide bond formation, the essential condensation reaction underlying peptide synthesis, is hindered in aqueous systems by the thermodynamic constraints associated with dehydration. This represents a key difficulty for the widely held view that prebiotic chemical evolution leading to the formation of...

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Autores principales: Holden, Dylan T., Morato, Nicolás M., Cooks, R. Graham
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9586328/
https://www.ncbi.nlm.nih.gov/pubmed/36191178
http://dx.doi.org/10.1073/pnas.2212642119
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author Holden, Dylan T.
Morato, Nicolás M.
Cooks, R. Graham
author_facet Holden, Dylan T.
Morato, Nicolás M.
Cooks, R. Graham
author_sort Holden, Dylan T.
collection PubMed
description Amide bond formation, the essential condensation reaction underlying peptide synthesis, is hindered in aqueous systems by the thermodynamic constraints associated with dehydration. This represents a key difficulty for the widely held view that prebiotic chemical evolution leading to the formation of the first biomolecules occurred in an oceanic environment. Recent evidence for the acceleration of chemical reactions at droplet interfaces led us to explore aqueous amino acid droplet chemistry. We report the formation of dipeptide isomer ions from free glycine or L-alanine at the air–water interface of aqueous microdroplets emanating from a single spray source (with or without applied potential) during their flight toward the inlet of a mass spectrometer. The proposed isomeric dipeptide ion is an oxazolidinone that takes fully covalent and ion-neutral complex forms. This structure is consistent with observed fragmentation patterns and its conversion to authentic dipeptide ions upon gentle collisions and for its formation from authentic dipeptides at ultra-low concentrations. It also rationalizes the results of droplet fusion experiments that show that the dipeptide isomer facilitates additional amide bond formation events, yielding authentic tri- through hexapeptides. We propose that the interface of aqueous microdroplets serves as a drying surface that shifts the equilibrium between free amino acids in favor of dehydration via stabilization of the dipeptide isomers. These findings offer a possible solution to the water paradox of biopolymer synthesis in prebiotic chemistry.
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spelling pubmed-95863282023-04-03 Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids Holden, Dylan T. Morato, Nicolás M. Cooks, R. Graham Proc Natl Acad Sci U S A Physical Sciences Amide bond formation, the essential condensation reaction underlying peptide synthesis, is hindered in aqueous systems by the thermodynamic constraints associated with dehydration. This represents a key difficulty for the widely held view that prebiotic chemical evolution leading to the formation of the first biomolecules occurred in an oceanic environment. Recent evidence for the acceleration of chemical reactions at droplet interfaces led us to explore aqueous amino acid droplet chemistry. We report the formation of dipeptide isomer ions from free glycine or L-alanine at the air–water interface of aqueous microdroplets emanating from a single spray source (with or without applied potential) during their flight toward the inlet of a mass spectrometer. The proposed isomeric dipeptide ion is an oxazolidinone that takes fully covalent and ion-neutral complex forms. This structure is consistent with observed fragmentation patterns and its conversion to authentic dipeptide ions upon gentle collisions and for its formation from authentic dipeptides at ultra-low concentrations. It also rationalizes the results of droplet fusion experiments that show that the dipeptide isomer facilitates additional amide bond formation events, yielding authentic tri- through hexapeptides. We propose that the interface of aqueous microdroplets serves as a drying surface that shifts the equilibrium between free amino acids in favor of dehydration via stabilization of the dipeptide isomers. These findings offer a possible solution to the water paradox of biopolymer synthesis in prebiotic chemistry. National Academy of Sciences 2022-10-03 2022-10-18 /pmc/articles/PMC9586328/ /pubmed/36191178 http://dx.doi.org/10.1073/pnas.2212642119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Holden, Dylan T.
Morato, Nicolás M.
Cooks, R. Graham
Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title_full Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title_fullStr Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title_full_unstemmed Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title_short Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
title_sort aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9586328/
https://www.ncbi.nlm.nih.gov/pubmed/36191178
http://dx.doi.org/10.1073/pnas.2212642119
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