Cargando…

Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer

Ribonucleotide reductase (RNR) small subunit M2 (RRM2) levels are known to regulate the activity of RNR, a rate-limiting enzyme in the synthesis of deoxyribonucleotide triphosphates (dNTPs) and essential for both DNA replication and repair. The high expression of RRM2 enhances the proliferation of c...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Liyuan, Yin, Le, Ma, Linxiang, Yang, Jiarui, Yang, Feiya, Sun, Baofa, Nianzeng, Xing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9596216/
https://www.ncbi.nlm.nih.gov/pubmed/36202136
http://dx.doi.org/10.18632/aging.204315
_version_ 1784815821131874304
author Wu, Liyuan
Yin, Le
Ma, Linxiang
Yang, Jiarui
Yang, Feiya
Sun, Baofa
Nianzeng, Xing
author_facet Wu, Liyuan
Yin, Le
Ma, Linxiang
Yang, Jiarui
Yang, Feiya
Sun, Baofa
Nianzeng, Xing
author_sort Wu, Liyuan
collection PubMed
description Ribonucleotide reductase (RNR) small subunit M2 (RRM2) levels are known to regulate the activity of RNR, a rate-limiting enzyme in the synthesis of deoxyribonucleotide triphosphates (dNTPs) and essential for both DNA replication and repair. The high expression of RRM2 enhances the proliferation of cancer cells, thereby implicating its role as an anti-cancer agent. However, little research has been performed on its role in the prognosis of different types of cancers. This pan-cancer study aimed to evaluate the effect of high expression of RRM2 the tumor prognosis based on clinical information collected from The Cancer Genome Atlas (TCGA) and The Genotype-Tissue Expression (GTEx) databases. We found RRM2 gene was highly expressed in 30 types of cancers. And we performed a pan-cancer analysis of the genetic alteration status and methylation of RRM2. Results indicated that RRM2 existed hypermethylation, associated with m6A, m1A, and m5C related genes. Subsequently, we explored the microRNAs (miRNA), long non-coding RNAs (lncRNA), and the transcription factors responsible for the high expression of RRM2 in cancer cells. Results indicated that has-miR-125b-5p and has-miR-30a-5p regulated the expression of RRM2 along with transcription factors, such as CBFB, E2F1, and FOXM. Besides, we established the competing endogenous RNA (ceRNA) diagram of lncRNAs-miRNAs-circular RNAs (circRNA) involved in the regulation of RRM2 expression. Meanwhile, our study demonstrated that high-RRM2 levels correlated with patients’ worse prognosis survival and immunotherapy effects through the consensus clustering and risk scores analysis. Finally, we found RRM2 regulated the resistance of immune checkpoint inhibitors through the PI3K-AKT single pathways. Collectively, our findings elucidated that high expression of RRM2 correlates with prognosis and tumor immunotherapy in pan-cancer. Moreover, these findings may provide insights for further investigation of the RRM2 gene as a biomarker in predicting immunotherapy’s response and therapeutic target.
format Online
Article
Text
id pubmed-9596216
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Impact Journals
record_format MEDLINE/PubMed
spelling pubmed-95962162022-10-27 Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer Wu, Liyuan Yin, Le Ma, Linxiang Yang, Jiarui Yang, Feiya Sun, Baofa Nianzeng, Xing Aging (Albany NY) Research Paper Ribonucleotide reductase (RNR) small subunit M2 (RRM2) levels are known to regulate the activity of RNR, a rate-limiting enzyme in the synthesis of deoxyribonucleotide triphosphates (dNTPs) and essential for both DNA replication and repair. The high expression of RRM2 enhances the proliferation of cancer cells, thereby implicating its role as an anti-cancer agent. However, little research has been performed on its role in the prognosis of different types of cancers. This pan-cancer study aimed to evaluate the effect of high expression of RRM2 the tumor prognosis based on clinical information collected from The Cancer Genome Atlas (TCGA) and The Genotype-Tissue Expression (GTEx) databases. We found RRM2 gene was highly expressed in 30 types of cancers. And we performed a pan-cancer analysis of the genetic alteration status and methylation of RRM2. Results indicated that RRM2 existed hypermethylation, associated with m6A, m1A, and m5C related genes. Subsequently, we explored the microRNAs (miRNA), long non-coding RNAs (lncRNA), and the transcription factors responsible for the high expression of RRM2 in cancer cells. Results indicated that has-miR-125b-5p and has-miR-30a-5p regulated the expression of RRM2 along with transcription factors, such as CBFB, E2F1, and FOXM. Besides, we established the competing endogenous RNA (ceRNA) diagram of lncRNAs-miRNAs-circular RNAs (circRNA) involved in the regulation of RRM2 expression. Meanwhile, our study demonstrated that high-RRM2 levels correlated with patients’ worse prognosis survival and immunotherapy effects through the consensus clustering and risk scores analysis. Finally, we found RRM2 regulated the resistance of immune checkpoint inhibitors through the PI3K-AKT single pathways. Collectively, our findings elucidated that high expression of RRM2 correlates with prognosis and tumor immunotherapy in pan-cancer. Moreover, these findings may provide insights for further investigation of the RRM2 gene as a biomarker in predicting immunotherapy’s response and therapeutic target. Impact Journals 2022-10-03 /pmc/articles/PMC9596216/ /pubmed/36202136 http://dx.doi.org/10.18632/aging.204315 Text en Copyright: © 2022 Wu et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wu, Liyuan
Yin, Le
Ma, Linxiang
Yang, Jiarui
Yang, Feiya
Sun, Baofa
Nianzeng, Xing
Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title_full Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title_fullStr Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title_full_unstemmed Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title_short Comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit M2(RRM2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
title_sort comprehensive bioinformatics analysis of ribonucleoside diphosphate reductase subunit m2(rrm2) gene correlates with prognosis and tumor immunotherapy in pan-cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9596216/
https://www.ncbi.nlm.nih.gov/pubmed/36202136
http://dx.doi.org/10.18632/aging.204315
work_keys_str_mv AT wuliyuan comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT yinle comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT malinxiang comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT yangjiarui comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT yangfeiya comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT sunbaofa comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer
AT nianzengxing comprehensivebioinformaticsanalysisofribonucleosidediphosphatereductasesubunitm2rrm2genecorrelateswithprognosisandtumorimmunotherapyinpancancer