Cargando…

Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome

A cytochrome c(552) mutant from Thermus thermophilus HB8 (rC(552) C14A) was reported, where the polypeptide with replaced Cys14 by alanine, overexpressed in the cytosol of E. coli. The apo-form of the C14A mutant (apo-C14A) without the original prosthetic group was obtained by simple chemical treatm...

Descripción completa

Detalles Bibliográficos
Autores principales: Ibrahim, Sheikh Muhammad, Ben Aoun, Sami, Nakajima, Hiroshi, Kooli, Fethi, Watanabe, Yoshihito
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599503/
https://www.ncbi.nlm.nih.gov/pubmed/36291538
http://dx.doi.org/10.3390/biom12101329
_version_ 1784816610287026176
author Ibrahim, Sheikh Muhammad
Ben Aoun, Sami
Nakajima, Hiroshi
Kooli, Fethi
Watanabe, Yoshihito
author_facet Ibrahim, Sheikh Muhammad
Ben Aoun, Sami
Nakajima, Hiroshi
Kooli, Fethi
Watanabe, Yoshihito
author_sort Ibrahim, Sheikh Muhammad
collection PubMed
description A cytochrome c(552) mutant from Thermus thermophilus HB8 (rC(552) C14A) was reported, where the polypeptide with replaced Cys14 by alanine, overexpressed in the cytosol of E. coli. The apo-form of the C14A mutant (apo-C14A) without the original prosthetic group was obtained by simple chemical treatments that retained compact conformation amenable to reconstitution with heme b and zinc(II)-protoporphyrin(IX), gradually followed by spontaneous formation of a covalent bond between the polypeptide and porphyrin ring in the reconstituted apo-C14A. Further analysis suggested that the residual Cys11 and vinyl group of the porphyrin ring linked through the thiol-ene reaction promoted by light under ambient conditions. In this study, we describe the kinetic improvement of the covalent bond formation in accordance with the mechanism of the photoinduced thiol-ene reaction, which involves a thiyl radical as a reaction intermediate. Adding a radical generator to the reconstituted C14A mutant with either heme-b or zinc(II) porphyrin accelerated the bond-forming reaction, which supported the involvement of a radical species in the reaction. Partial observation of the reconstituted C14A in a dimer form and detection of sulfuryl radical by EPR spectroscopy indicated a thiyl radical on Cys11, a unique cysteinyl residue in rC(552) C14A. The covalent bond forming mediated by the radical generator was also adaptable to the reconstituted apo-C14A with manganese(II)-protoporphyrin(IX), which also exhibits light-mediated covalent linkage formation. Therefore, the radical generator extends the versatility of producing c-type-like cytochrome starting from a metallo-protoporphyrin(IX) and the apo-C14A instantaneously.
format Online
Article
Text
id pubmed-9599503
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-95995032022-10-27 Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome Ibrahim, Sheikh Muhammad Ben Aoun, Sami Nakajima, Hiroshi Kooli, Fethi Watanabe, Yoshihito Biomolecules Article A cytochrome c(552) mutant from Thermus thermophilus HB8 (rC(552) C14A) was reported, where the polypeptide with replaced Cys14 by alanine, overexpressed in the cytosol of E. coli. The apo-form of the C14A mutant (apo-C14A) without the original prosthetic group was obtained by simple chemical treatments that retained compact conformation amenable to reconstitution with heme b and zinc(II)-protoporphyrin(IX), gradually followed by spontaneous formation of a covalent bond between the polypeptide and porphyrin ring in the reconstituted apo-C14A. Further analysis suggested that the residual Cys11 and vinyl group of the porphyrin ring linked through the thiol-ene reaction promoted by light under ambient conditions. In this study, we describe the kinetic improvement of the covalent bond formation in accordance with the mechanism of the photoinduced thiol-ene reaction, which involves a thiyl radical as a reaction intermediate. Adding a radical generator to the reconstituted C14A mutant with either heme-b or zinc(II) porphyrin accelerated the bond-forming reaction, which supported the involvement of a radical species in the reaction. Partial observation of the reconstituted C14A in a dimer form and detection of sulfuryl radical by EPR spectroscopy indicated a thiyl radical on Cys11, a unique cysteinyl residue in rC(552) C14A. The covalent bond forming mediated by the radical generator was also adaptable to the reconstituted apo-C14A with manganese(II)-protoporphyrin(IX), which also exhibits light-mediated covalent linkage formation. Therefore, the radical generator extends the versatility of producing c-type-like cytochrome starting from a metallo-protoporphyrin(IX) and the apo-C14A instantaneously. MDPI 2022-09-20 /pmc/articles/PMC9599503/ /pubmed/36291538 http://dx.doi.org/10.3390/biom12101329 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ibrahim, Sheikh Muhammad
Ben Aoun, Sami
Nakajima, Hiroshi
Kooli, Fethi
Watanabe, Yoshihito
Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title_full Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title_fullStr Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title_full_unstemmed Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title_short Radical Mediated Rapid In Vitro Formation of c-Type Cytochrome
title_sort radical mediated rapid in vitro formation of c-type cytochrome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599503/
https://www.ncbi.nlm.nih.gov/pubmed/36291538
http://dx.doi.org/10.3390/biom12101329
work_keys_str_mv AT ibrahimsheikhmuhammad radicalmediatedrapidinvitroformationofctypecytochrome
AT benaounsami radicalmediatedrapidinvitroformationofctypecytochrome
AT nakajimahiroshi radicalmediatedrapidinvitroformationofctypecytochrome
AT koolifethi radicalmediatedrapidinvitroformationofctypecytochrome
AT watanabeyoshihito radicalmediatedrapidinvitroformationofctypecytochrome