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Application of multi-objective optimization in the study of anti-breast cancer candidate drugs
In the development of anti-breast cancer drugs, the quantitative structure-activity relationship model of compounds is usually used to select potential active compounds. However, the existing methods often have problems such as low model prediction performance, lack of overall consideration of the b...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9652409/ https://www.ncbi.nlm.nih.gov/pubmed/36369522 http://dx.doi.org/10.1038/s41598-022-23851-0 |
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author | Mei, Yuan Wu, Kaijun |
author_facet | Mei, Yuan Wu, Kaijun |
author_sort | Mei, Yuan |
collection | PubMed |
description | In the development of anti-breast cancer drugs, the quantitative structure-activity relationship model of compounds is usually used to select potential active compounds. However, the existing methods often have problems such as low model prediction performance, lack of overall consideration of the biological activity and related properties of compounds, and difficulty in directly selection candidate drugs. Therefore, this paper constructs a complete set of compound selection framework from three aspects: feature selection, relationship mapping and multi-objective optimization problem solving. In feature selection part, a feature selection method based on unsupervised spectral clustering is proposed. The selected features have more comprehensive information expression ability. In the relationship mapping part, a variety of machine learning algorithms are used for comparative experiments. Finally, the CatBoost algorithm is selected to perform the relationship mapping between each other, and better prediction performance is achieved. In the multi-objective optimization part, based on the analysis of the conflict relationship between the objectives, the AGE-MOEA algorithm is improved and used to solve this problem. Compared with various algorithms, the improved algorithm has better search performance. |
format | Online Article Text |
id | pubmed-9652409 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96524092022-11-15 Application of multi-objective optimization in the study of anti-breast cancer candidate drugs Mei, Yuan Wu, Kaijun Sci Rep Article In the development of anti-breast cancer drugs, the quantitative structure-activity relationship model of compounds is usually used to select potential active compounds. However, the existing methods often have problems such as low model prediction performance, lack of overall consideration of the biological activity and related properties of compounds, and difficulty in directly selection candidate drugs. Therefore, this paper constructs a complete set of compound selection framework from three aspects: feature selection, relationship mapping and multi-objective optimization problem solving. In feature selection part, a feature selection method based on unsupervised spectral clustering is proposed. The selected features have more comprehensive information expression ability. In the relationship mapping part, a variety of machine learning algorithms are used for comparative experiments. Finally, the CatBoost algorithm is selected to perform the relationship mapping between each other, and better prediction performance is achieved. In the multi-objective optimization part, based on the analysis of the conflict relationship between the objectives, the AGE-MOEA algorithm is improved and used to solve this problem. Compared with various algorithms, the improved algorithm has better search performance. Nature Publishing Group UK 2022-11-11 /pmc/articles/PMC9652409/ /pubmed/36369522 http://dx.doi.org/10.1038/s41598-022-23851-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The im3. ages or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Mei, Yuan Wu, Kaijun Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title | Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title_full | Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title_fullStr | Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title_full_unstemmed | Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title_short | Application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
title_sort | application of multi-objective optimization in the study of anti-breast cancer candidate drugs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9652409/ https://www.ncbi.nlm.nih.gov/pubmed/36369522 http://dx.doi.org/10.1038/s41598-022-23851-0 |
work_keys_str_mv | AT meiyuan applicationofmultiobjectiveoptimizationinthestudyofantibreastcancercandidatedrugs AT wukaijun applicationofmultiobjectiveoptimizationinthestudyofantibreastcancercandidatedrugs |