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High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS

The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The res...

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Detalles Bibliográficos
Autores principales: Köhler, Robin, Kaganovitch, Eugen, Murray, Seán M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662831/
https://www.ncbi.nlm.nih.gov/pubmed/36374535
http://dx.doi.org/10.7554/eLife.78743
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author Köhler, Robin
Kaganovitch, Eugen
Murray, Seán M
author_facet Köhler, Robin
Kaganovitch, Eugen
Murray, Seán M
author_sort Köhler, Robin
collection PubMed
description The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The resulting nucleoprotein complexes are believed to move up a self-generated gradient of nucleoid-associated ParA. However, it remains unclear how this leads to the observed cargo positioning and dynamics. In particular, the evaluation of models of plasmid positioning has been hindered by the lack of quantitative measurements of plasmid dynamics. Here, we use high-throughput imaging, analysis and modelling to determine the dynamical nature of these systems. We find that F plasmid is actively brought to specific subcellular home positions within the cell with dynamics akin to an over-damped spring. We develop a unified stochastic model that quantitatively explains this behaviour and predicts that cells with the lowest plasmid concentration transition to oscillatory dynamics. We confirm this prediction for F plasmid as well as a distantly-related ParABS system. Our results indicate that ParABS regularly positions plasmids across the nucleoid but operates just below the threshold of an oscillatory instability, which according to our model, minimises ATP consumption. Our work also clarifies how various plasmid dynamics are achievable in a single unified stochastic model. Overall, this work uncovers the dynamical nature of plasmid positioning by ParABS and provides insights relevant for chromosome-based systems.
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spelling pubmed-96628312022-11-15 High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS Köhler, Robin Kaganovitch, Eugen Murray, Seán M eLife Microbiology and Infectious Disease The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The resulting nucleoprotein complexes are believed to move up a self-generated gradient of nucleoid-associated ParA. However, it remains unclear how this leads to the observed cargo positioning and dynamics. In particular, the evaluation of models of plasmid positioning has been hindered by the lack of quantitative measurements of plasmid dynamics. Here, we use high-throughput imaging, analysis and modelling to determine the dynamical nature of these systems. We find that F plasmid is actively brought to specific subcellular home positions within the cell with dynamics akin to an over-damped spring. We develop a unified stochastic model that quantitatively explains this behaviour and predicts that cells with the lowest plasmid concentration transition to oscillatory dynamics. We confirm this prediction for F plasmid as well as a distantly-related ParABS system. Our results indicate that ParABS regularly positions plasmids across the nucleoid but operates just below the threshold of an oscillatory instability, which according to our model, minimises ATP consumption. Our work also clarifies how various plasmid dynamics are achievable in a single unified stochastic model. Overall, this work uncovers the dynamical nature of plasmid positioning by ParABS and provides insights relevant for chromosome-based systems. eLife Sciences Publications, Ltd 2022-11-14 /pmc/articles/PMC9662831/ /pubmed/36374535 http://dx.doi.org/10.7554/eLife.78743 Text en © 2022, Köhler et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Microbiology and Infectious Disease
Köhler, Robin
Kaganovitch, Eugen
Murray, Seán M
High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title_full High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title_fullStr High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title_full_unstemmed High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title_short High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
title_sort high-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by parabs
topic Microbiology and Infectious Disease
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662831/
https://www.ncbi.nlm.nih.gov/pubmed/36374535
http://dx.doi.org/10.7554/eLife.78743
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