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High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS
The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The res...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662831/ https://www.ncbi.nlm.nih.gov/pubmed/36374535 http://dx.doi.org/10.7554/eLife.78743 |
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author | Köhler, Robin Kaganovitch, Eugen Murray, Seán M |
author_facet | Köhler, Robin Kaganovitch, Eugen Murray, Seán M |
author_sort | Köhler, Robin |
collection | PubMed |
description | The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The resulting nucleoprotein complexes are believed to move up a self-generated gradient of nucleoid-associated ParA. However, it remains unclear how this leads to the observed cargo positioning and dynamics. In particular, the evaluation of models of plasmid positioning has been hindered by the lack of quantitative measurements of plasmid dynamics. Here, we use high-throughput imaging, analysis and modelling to determine the dynamical nature of these systems. We find that F plasmid is actively brought to specific subcellular home positions within the cell with dynamics akin to an over-damped spring. We develop a unified stochastic model that quantitatively explains this behaviour and predicts that cells with the lowest plasmid concentration transition to oscillatory dynamics. We confirm this prediction for F plasmid as well as a distantly-related ParABS system. Our results indicate that ParABS regularly positions plasmids across the nucleoid but operates just below the threshold of an oscillatory instability, which according to our model, minimises ATP consumption. Our work also clarifies how various plasmid dynamics are achievable in a single unified stochastic model. Overall, this work uncovers the dynamical nature of plasmid positioning by ParABS and provides insights relevant for chromosome-based systems. |
format | Online Article Text |
id | pubmed-9662831 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-96628312022-11-15 High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS Köhler, Robin Kaganovitch, Eugen Murray, Seán M eLife Microbiology and Infectious Disease The faithful segregation and inheritance of bacterial chromosomes and low-copy number plasmids requires dedicated partitioning systems. The most common of these, ParABS, consists of ParA, a DNA-binding ATPase and ParB, a protein that binds to centromeric-like parS sequences on the DNA cargo. The resulting nucleoprotein complexes are believed to move up a self-generated gradient of nucleoid-associated ParA. However, it remains unclear how this leads to the observed cargo positioning and dynamics. In particular, the evaluation of models of plasmid positioning has been hindered by the lack of quantitative measurements of plasmid dynamics. Here, we use high-throughput imaging, analysis and modelling to determine the dynamical nature of these systems. We find that F plasmid is actively brought to specific subcellular home positions within the cell with dynamics akin to an over-damped spring. We develop a unified stochastic model that quantitatively explains this behaviour and predicts that cells with the lowest plasmid concentration transition to oscillatory dynamics. We confirm this prediction for F plasmid as well as a distantly-related ParABS system. Our results indicate that ParABS regularly positions plasmids across the nucleoid but operates just below the threshold of an oscillatory instability, which according to our model, minimises ATP consumption. Our work also clarifies how various plasmid dynamics are achievable in a single unified stochastic model. Overall, this work uncovers the dynamical nature of plasmid positioning by ParABS and provides insights relevant for chromosome-based systems. eLife Sciences Publications, Ltd 2022-11-14 /pmc/articles/PMC9662831/ /pubmed/36374535 http://dx.doi.org/10.7554/eLife.78743 Text en © 2022, Köhler et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Microbiology and Infectious Disease Köhler, Robin Kaganovitch, Eugen Murray, Seán M High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title | High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title_full | High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title_fullStr | High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title_full_unstemmed | High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title_short | High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS |
title_sort | high-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by parabs |
topic | Microbiology and Infectious Disease |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662831/ https://www.ncbi.nlm.nih.gov/pubmed/36374535 http://dx.doi.org/10.7554/eLife.78743 |
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