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Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences

[Image: see text] Many proteins harboring low complexity or intrinsically disordered sequences (IDRs) are capable of undergoing liquid–liquid phase separation to form mesoscale condensates that function as biochemical niches with the ability to concentrate or sequester macromolecules and regulate ce...

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Autores principales: Garabedian, Mikael V., Su, Zhihui, Dabdoub, Jorge, Tong, Michelle, Deiters, Alexander, Hammer, Daniel A., Good, Matthew C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9669173/
https://www.ncbi.nlm.nih.gov/pubmed/35918061
http://dx.doi.org/10.1021/acs.biochem.2c00250
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author Garabedian, Mikael V.
Su, Zhihui
Dabdoub, Jorge
Tong, Michelle
Deiters, Alexander
Hammer, Daniel A.
Good, Matthew C.
author_facet Garabedian, Mikael V.
Su, Zhihui
Dabdoub, Jorge
Tong, Michelle
Deiters, Alexander
Hammer, Daniel A.
Good, Matthew C.
author_sort Garabedian, Mikael V.
collection PubMed
description [Image: see text] Many proteins harboring low complexity or intrinsically disordered sequences (IDRs) are capable of undergoing liquid–liquid phase separation to form mesoscale condensates that function as biochemical niches with the ability to concentrate or sequester macromolecules and regulate cellular activity. Engineered disordered proteins have been used to generate programmable synthetic membraneless organelles in cells. Phase separation is governed by the strength of interactions among polypeptides with multivalency enhancing phase separation at lower concentrations. Previously, we and others demonstrated enzymatic control of IDR valency from multivalent precursors to dissolve condensed phases. Here, we develop noncovalent strategies to multimerize an individual IDR, the RGG domain of LAF-1, using protein interaction domains to regulate condensate formation in vitro and in living cells. First, we characterize modular dimerization of RGG domains at either terminus using cognate high-affinity coiled-coil pairs to form stable condensates in vitro. Second, we demonstrate temporal control over phase separation of RGG domains fused to FRB and FKBP in the presence of dimerizer. Further, using a photocaged dimerizer, we achieve optically induced condensation both in cell-sized emulsions and within live cells. Collectively, these modular tools allow multiple strategies to promote phase separation of a common core IDR for tunable control of condensate assembly.
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spelling pubmed-96691732022-11-17 Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences Garabedian, Mikael V. Su, Zhihui Dabdoub, Jorge Tong, Michelle Deiters, Alexander Hammer, Daniel A. Good, Matthew C. Biochemistry [Image: see text] Many proteins harboring low complexity or intrinsically disordered sequences (IDRs) are capable of undergoing liquid–liquid phase separation to form mesoscale condensates that function as biochemical niches with the ability to concentrate or sequester macromolecules and regulate cellular activity. Engineered disordered proteins have been used to generate programmable synthetic membraneless organelles in cells. Phase separation is governed by the strength of interactions among polypeptides with multivalency enhancing phase separation at lower concentrations. Previously, we and others demonstrated enzymatic control of IDR valency from multivalent precursors to dissolve condensed phases. Here, we develop noncovalent strategies to multimerize an individual IDR, the RGG domain of LAF-1, using protein interaction domains to regulate condensate formation in vitro and in living cells. First, we characterize modular dimerization of RGG domains at either terminus using cognate high-affinity coiled-coil pairs to form stable condensates in vitro. Second, we demonstrate temporal control over phase separation of RGG domains fused to FRB and FKBP in the presence of dimerizer. Further, using a photocaged dimerizer, we achieve optically induced condensation both in cell-sized emulsions and within live cells. Collectively, these modular tools allow multiple strategies to promote phase separation of a common core IDR for tunable control of condensate assembly. American Chemical Society 2022-08-02 2022-11-15 /pmc/articles/PMC9669173/ /pubmed/35918061 http://dx.doi.org/10.1021/acs.biochem.2c00250 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Garabedian, Mikael V.
Su, Zhihui
Dabdoub, Jorge
Tong, Michelle
Deiters, Alexander
Hammer, Daniel A.
Good, Matthew C.
Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title_full Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title_fullStr Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title_full_unstemmed Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title_short Protein Condensate Formation via Controlled Multimerization of Intrinsically Disordered Sequences
title_sort protein condensate formation via controlled multimerization of intrinsically disordered sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9669173/
https://www.ncbi.nlm.nih.gov/pubmed/35918061
http://dx.doi.org/10.1021/acs.biochem.2c00250
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